zebrafish

A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

A vocabulary for describing Zebrafish Phenotypes

Software for performing offline tracking of zebrafish larvae.

Code for "Convergent Temperature Representations in Artificial and Biological Neural Networks"

Napari plugin for spatial RNA quantification

Modelling the larval zebrafish field of view for illustration purposes

#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology

Zebrafish embryo fluorescence quantification

CV Zebrafish — a modular software tool to track and analyze zebrafish movements from high-speed imaging. It integrates with DeepLabCut outputs to compute metrics like fin angles, movement timing, speed, and behavior classification

A simple tool for zebrafish brain visualization.

Behavioral and Transcriptomic Analyses of mecp2 Function in Zebrafish

🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)

Plataforma desktop (Python/Tkinter) para rastreamento multi-animal e análise comportamental de zebrafish (Danio rerio): detecção YOLO/OpenVINO com suporte a NPU, vídeo pré-gravado ou câmera ao vivo, análise multi-aquário em paralelo, métricas científicas (ROIs/zonas, geotaxia, calibração em cm), gatilhos Arduino e relatórios Excel/Word.

Set of functions, scripts and notebooks used in the brain-wide auditory processing project

Software for analyis of zebrafish embryo sponaneous tail contractions and photomotor response

Computing functional maps in zebrafish brain

Zebrafish project for Champalimaud Research

Open-source desktop application for OECD TG 236 zebrafish embryo toxicity (FET) assays — experimental design, daily well scoring, LC50/NOEC/LOEC and sublethal endpoint analysis, OECD validity checks, and automated Word report generation. Developed by Henrique Tamanini S. Moschen, University of Brasilia.

Early life GC exposed time-series mRNA-seq analysis and DNA methylome