Toolbox for the analysis of smFISH images.
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Oct 31, 2023 - Python
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spot-detection
Here are 10 public repositories matching this topic...
Threshold independent detection and localization of diffraction-limited spots.
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Oct 13, 2026 - Python
Deep Learning Library for Spot Detection
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Jun 4, 2026 - Python
Napari plugin for spatial RNA quantification
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Oct 22, 2026 - Python
napari plugin for blob detection in images
detection filter cookiecutter blob spot blob-detection napari-plugin napari spot-detection cookiecutter-napari-plugin
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Nov 3, 2023 - Python
Deep learning-based particle detection tool for microscopy images
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Dec 27, 2022 - Python
Fluospotter is an end-to-end pipeline designed for nuclei segmentation and puncta detection in fluorescence microscopy images.
deep-learning segmentation cell-segmentation cell-biology u-net 3d-volume microscopy-images diffraction-limited-spots spot-detection
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Oct 2, 2024 - Python
SpotiFlow x Segment Anything for Microscopy
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Feb 24, 2025 - Jupyter Notebook
The workshop 3D bioimage analysis with open source software
machine-learning morphology image-processing segmentation filters spatial-analysis post-processing image-analysis 3d 3d-reconstruction 3d-visualization deconvolution spatial-statistics colocalization pre-processing napari spot-detection
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Oct 19, 2026 - Jupyter Notebook
Python port of AIRLOCALIZE spot detection with an interactive napari tuner and an HPC batch CLI
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Oct 29, 2026 - Python
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