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Sep 22, 2021 - Python
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vsearch
Here are 12 public repositories matching this topic...
Fred's metabarcoding pipeline with Nextflow
bioinformatics nextflow taxonomy reproducible-research swarm edna metabarcoding amplicon cutadapt asv vsearch chimera-detection
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Nov 3, 2026 - Python
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Jan 16, 2020 - Shell
quick taxonomic assignment of Nanopore metabarding data
bioinformatics nanopore nextflow metagenomics microbiome metabarcoding oxford-nanopore cutadapt amplicon-sequencing occurrence-matrix vsearch long-read-sequencing taxonomic-assignment nextflow-pipeline basecalling metabarcoding-pipeline
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Oct 11, 2026 - Shell
VSEARCH pipeline for ASV inference of 16S seq data
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Oct 19, 2026 - Nextflow
Open-world evaluation of a learned fungal ITS embedding against correctly configured VSEARCH alignment
benchmarking bioinformatics pytorch reproducibility unite metabarcoding conformal-prediction novelty-detection vsearch dna-barcoding fungal-its
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Sep 24, 2026 - Python
Code and data used for analysis and estimation of invertebrate biodiversity on a temperate forested island (Hauturu) based on DNA barcodes and soil DNA metabarcoding data.
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Sep 6, 2018 - R
Rsearch: An R Interface to VSEARCH supporting visualization and parameter tuning
bioinformatics pipeline clustering fasta fastq metabarcoding amplicon 16s denoising otu vsearch sintax metabarcoding-pipeline unoise
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Nov 3, 2026 - R
Taxonomic classification of DNA sequences using BLAST or vsearch with configurable identity thresholds and batch processing
bioinformatics taxonomy fasta blast edna fastq environmental-dna taxonomic-classification sequence-analysis dna-sequencing vsearch
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Dec 20, 2025 - Python
Generalised, marker-agnostic metabarcoding pipeline (18S/ITS/16S, DADA2 + VSEARCH)
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Aug 18, 2026 - R
Reproducible 16S/18S metabarcoding pipeline (VSEARCH + Wang-style k-mer classifier). Benchmarked against mothur and QIIME 2 — ECCB 2026.
python bioinformatics microbiome metabarcoding silva taxonomic-classification amplicon-sequencing 16s-rrna vsearch 18s-rrna
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Oct 27, 2026 - Python
Modular framework for eDNA metabarcoding and biodiversity data analysis, inspired by Dante’s Divine Comedy.
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Sep 11, 2026 - Python
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