dna-barcoding

A Go package for engineering organisms.

High-performance dual barcode and primer demultiplexer for MinION sequenced reads, optimized for fungal DNA barcoding.

An R package for pre-processing and error evaluation of COI-5P barcode data

Pipeline for building topologically-constrained phylogenies from DNA barcode data

This repository contains data and code from the manuscript, "Analysis of biodiversity data suggests that species are hidden in predictable places".

Parser of BLAST results

Automated DNA barcoding pipeline: chromatogram → phylogeny → species ID. Zero coding required. Built for ENTM201L @ UC Riverside. Docker + GitHub Classroom ready.

DNA barcoding analysis pipeline

My first DNA barcoding project - Philippine Eagle, Barn Owl, and Sumatran Rhinoceros

Tools for managing OTU definitions for barcoding fungi

A sequence-by-sequence denoiser for COI DNA barcode and metabarcode data

Bioinformatic processes used to obtain invertebrate DNA barcodes from Illumina sequencing output

Files from DIMACS 2007 DNA barcoding challenge

Iterative extrapolation of species haplotype accumulation curves for genetic diversity assessment.

Repository containing a python script for barcode gap plotting, as well as an example input-file for the script.

Nanopore-based amplicon pipeline for Anopheles species identification using COX1 and ITS2 consensus sequencing

R package for extracting chloroplast DNA barcode markers from GenBank plastomes, including rbcL, matK, and psbA-trnH.

Fetch DNA Barcode ITS sequences from iNaturalist observations and write them to FASTA.

Bayesian modeling of DNA-barcoded tumor mixtures to quantify genotype-specific treatment resistance

Ophelia – An interactive forensic investigation game featuring molecular analysis (FASTA sequence), DNA markers, and fingerprint analysis to solve crime cases, built using Java GUI with NetBeans frame navigation.