Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization
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Sep 20, 2021 - R
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tea-seq
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Codes for atlas building and construction of Prediction sets for cross modal query as described in 'Multimodal data integration and cross-modal querying via orchestrated approximate message passing' by Nandy and Ma (2024)
dimension-reduction multimodal-learning approximate-message-passing cite-seq sc-rna-seq-analysis tea-seq
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Aug 5, 2026 - Jupyter Notebook
Multi-modal denoising & prediction via Approximate Message Passing with a per-cluster Gaussian-Mixture empirical-Bayes prior (OrchAMP) — synthetic experiments plus real applications to TEA-seq single-cell multi-omics and TCGA-BRCA survival, benchmarked against JAFAR, MOFA+, Multigrate, and Cooperative Lasso.
supervised-learning multimodal-learning scrna-seq-analysis approximate-message-passing tcga-brca tea-seq
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Aug 24, 2026 - Jupyter Notebook
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