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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 399 162

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 27 16

Repositories

Showing 10 of 521 repositories
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder's past year of commit activity
    TypeScript 22 BSD-3-Clause 10 55 15 Updated Oct 12, 2026
  • bmtk Public

    Brain Modeling Toolkit

    AllenInstitute/bmtk's past year of commit activity
    Python 338 BSD-3-Clause 102 68 9 Updated Oct 12, 2026
  • arborist Public

    Trees are the most inspiring structures

    AllenInstitute/arborist's past year of commit activity
    Python 1 MIT 0 0 3 Updated Oct 12, 2026
  • biodata-schema Public

    Complete and accurate metadata for bioscience

    AllenInstitute/biodata-schema's past year of commit activity
    Python 3 MIT 0 69 2 Updated Oct 12, 2026
  • AutoPumping Public

    A Python package for automating high-vacuum pumping systems.

    AllenInstitute/AutoPumping's past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Oct 12, 2026
  • ConnectsCommonConnectivity Public

    A repository to organize data models and code for creating a pilot common connectivity matrix for BRAIN CONNECTS

    AllenInstitute/ConnectsCommonConnectivity's past year of commit activity
    Jupyter Notebook 4 MIT 1 31 3 Updated Oct 12, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES's past year of commit activity
    IGOR Pro 30 11 288 5 Updated Oct 12, 2026
  • zarr-vectors-py Public

    Utilties and tools for working with data in the Zarr-vectors data structure

    AllenInstitute/zarr-vectors-py's past year of commit activity
    Python 8 BSD-3-Clause 3 0 1 Updated Oct 12, 2026
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader's past year of commit activity
    Python 9 MIT 1 0 8 Updated Oct 10, 2026
  • npc_io Public

    File IO tools for MindScope Neuropixels projects in the cloud.

    AllenInstitute/npc_io's past year of commit activity
    Python 0 MIT 1 0 1 Updated Oct 9, 2026
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