Repository navigation
IUPAC symbols for orig-dups mode: non-ACGT (case insensitive) are converted to N - #147
Open
andrewdavidsmith wants to merge 7 commits into
Open
andrewdavidsmith wants to merge 7 commits into
andrewdavidsmith wants to merge 7 commits into
Conversation
…cates analysis here
…alizing original duplication data structures to original_duplicates.cpp
…ps_bam and init_orig_dups_fq to convert all non-ACGT letters to N prior to forming a falco_word when initializing the unique 'reads' for original duplicates analysis
…e htslib headers will be visibile when making original_duplicates.o
…n complementing the already reversed read sequence for revcomp mappers
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.