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allow uneven FoVs for FRC calculation #96

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allow uneven FoVs for FRC calculation #96

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14 changes: 10 additions & 4 deletions src/cdtools/tools/analysis/analysis.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1330,16 +1330,22 @@ def standardize_reconstruction_pair(
results : dict
A dictionary containing the synthesized results
"""
# We get the two half-data reconstructions
# We get the two half-data reconstructions
obj_1, probe_1, weights_1 = half_1['obj'],half_1['probe'],half_1['weights']
obj_2, probe_2, weights_2 = half_2['obj'],half_2['probe'],half_2['weights']


# The two object arrays can differ in size by a few pixels if the scanned
# fields of view differ slightly. We crop both to their common shape
n_rows = min(obj_1.shape[-2], obj_2.shape[-2])
n_cols = min(obj_1.shape[-1], obj_2.shape[-1])
obj_1 = obj_1[..., :n_rows, :n_cols]
obj_2 = obj_2[..., :n_rows, :n_cols]

if correct_phase_ramp:
obj_1, probe_1 = remove_phase_ramp(
half_1['obj'], window, probe=half_1['probe'])
obj_1, window, probe=probe_1)
obj_2, probe_2 = remove_phase_ramp(
half_2['obj'], window, probe=half_2['probe'])
obj_2, window, probe=probe_2)

# TODO weights are not included
if correct_amplitude_exponent:
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