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Develop - #89

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kathrynmurie wants to merge 29 commits into

mainfrom

Commits on Jun 4, 2026

update for deploy only on version tags;
nickjhathaway
committed
ce36a0f

Commits on Jun 5, 2026

default in the argparse was still mhap_id but we changed the default to be seq (it's changed to seq in the function itself)
nickjhathaway
committed
1d22c18

Commits on Jun 29, 2026

small fixes for mutation of input data for filter_pmo_by_target_ids;
nickjhathaway
committed
374e14e
update the hashes because now reads_by_stage is now properly exported so the old hashes were wrong;
nickjhathaway
committed
6ad954b
fix for when exporting a header for bed locations didn't add a newline; when asking for a sorted output would only return first panel, now will return all panels; added test
nickjhathaway
committed
5ea5a2e
update so pseudocigar is properly constructed during the building functions; updated unittests;
nickjhathaway
committed
c71bbfd
start and end were flipped when setting location for forward primer location;
nickjhathaway
committed
aa1c22f
fix for the change in the schema to qpcr name in the schema which was never updated in the pmtools-python;
nickjhathaway
committed
fb80099
two bugs in combine_pmos fixed;
nickjhathaway
committed
e45234f
fixed a left over old schema version where all fields were copies over, now checks for optionally ones;
nickjhathaway
committed
8b32cda
small fixes for handling minimum format; added more robust unittests for the v1.1.0 files;
nickjhathaway
committed
6bb0564

Commits on Jul 21, 2026

Commits on Oct 7, 2026