PlasmoGenEpi

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1. PGEcore PGEcore Public

   An R package for malaria genomics analysis. Includes wrappers of commonly used tools (e.g. MOIRE) and bespoke code to perform common tasks (e.g. naive methods).

   R 3

2. recombuddy recombuddy Public

   Simple simulator of Plasmodium falciparum genomic data that captures patterns of polyclonality and relatedness through recombination.

   R 3

3. pmotools-python pmotools-python Public

   Toolkit for working with Portable Microhaplotype Objects (PMOs)

   Python 2

4. portable-microhaplotype-object portable-microhaplotype-object Public

   A schema to define the minimum amount of data needed to export a microhaplotype calling pipeline analysis with associated metadata

   Python 1

5. PMO_Docs PMO_Docs Public

   Documentation for Portable Microhaplotype Object Tools

   Jupyter Notebook 1

6. pmotools-app pmotools-app Public

   A simple web app built with Streamlit that helps users convert their data into the PMO format using the `pmotools` package.

   Python 1