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feat(infra): add PathBank registered archive slice summary verifier for Cycle 12 Stage 6 (#673) - #800

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feat/cycle12-stage6-infrastructure
Nov 5, 2026
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realmarcin merged 1 commit into
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feat/cycle12-stage6-infrastructure

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Summary

  • Freezes INFRA_TASKS.md at 2026-11-05T17:31:58Z (sha256: 1759bb8ed4ca9dce101cb42c4f77116088a61167c5305e11c03099757c528aaf, 5 tasks total) for mech-goal-sequence-20261019 Cycle 12 Stage 6 (infrastructure).
  • Adds summarize_registered_pathbank_archive_slices in src/pathwaymech/pathbank_provenance.py and unit tests in tests/test_pathbank_identifier_authority.py for pathwaymech-infra-0001 (chore(authorities): register UniProtKB, RHEA, and PMID authority entries for remaining E. coli PathBank primary BioPAX pathways (pathwaymech-infra-0001) #673) so Stage 1 (add_records) curation can deterministically audit and partition all registered pathbank-biopax-zip manifest entries across conf/identifier_sources.json and data/identifier_authorities/sources.json into corpus_slice_verified_keys (12 primary archive-backed pathway records curated in data/pathways/), auxiliary_or_pending_keys (4 adjacent child-pathway/fixture authority entries), fully_verified_keys, and unverified_full_keys.
  • Updates INFRA_TASKS.md and reviews/workflow/latest.yaml, and saves the Cycle 12 Stage 6 workflow evidence bundle under reviews/workflow/mech-goal-sequence-20261019/cycle-000012/stage-06/revision-0001/.

@realmarcin
realmarcin added this pull request to the merge queue Nov 5, 2026
Merged via the queue into main with commit 8fd8968 Nov 5, 2026
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@realmarcin
realmarcin deleted the feat/cycle12-stage6-infrastructure branch November 5, 2026 18:44
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