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feat(pathways): add PathBank:SMP0002057 Tetrahydromonapterin Biosynthesis in E. coli (Cycle 13 Stage 1) - #801

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realmarcin merged 1 commit into
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feat/cycle13-stage1-add-records
Nov 5, 2026
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realmarcin merged 1 commit into
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feat/cycle13-stage1-add-records

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Summary

  • Synced reviews/workflow/latest.yaml with verified Cycle 12 Stage 6 closure (PR #800, merge commit 8fd8968feb9c7bb6d9f4cfcffc96715ea5d11c28).
  • Registered pathbank-primary-2019-PW002043-SMP0002057 (PW002043.owl, 44,499 bytes, SHA-256 03f2f79e67f9cfc36a279d2bc1c409d75df5b5a5c5952f830422f490429f635f) in conf/identifier_sources.json and data/identifier_authorities/sources.json and updated tests/test_pathbank_identifier_authority.py.
  • Added data/pathways/tetrahydromonapterin-biosynthesis-escherichia-coli.yaml (PathBank:SMP0002057, Tetrahydromonapterin Biosynthesis in Escherichia coli K-12, NCBITaxon:562 / NCBITaxon:83333, pathway_type: pterin-biosynthesis, 16 participants, 3 directional Rhea reactions RHEA:17474, RHEA:28347, RHEA:34848, 24 mechanistic edges, 3 SSSOM source mappings, and 13 references) and session provenance in history/records/tetrahydromonapterin-biosynthesis-escherichia-coli/2026-11-05T192500Z-antigravity-a1d1e5.yaml.
  • Updated INFRA_TASKS.md (pathwaymech-infra-0001, chore(authorities): register UniProtKB, RHEA, and PMID authority entries for remaining E. coli PathBank primary BioPAX pathways (pathwaymech-infra-0001) #673) and rendered pages/ and output/sssom/source_mappings.sssom.tsv (282 pathway records, 1,074 SSSOM rows).

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Independent Adversarial PR Review (41bed0a6-9309-4704-b4eb-4aab2210d9f4)

  • Reviewed head_sha: 41feef03026808b502d698348b5bc95596fb188d
  • Verdict: PASS (0 blocking defects, 0 non-blocking defects)
  • Verified reviews/workflow/latest.yaml against verified-evidence-index.json (Cycle 12 Stage 6, PR feat(infra): add PathBank registered archive slice summary verifier for Cycle 12 Stage 6 (#673) #800, merge commit 8fd8968feb9c7bb6d9f4cfcffc96715ea5d11c28), closed pathbank-biopax-zip authority provenance for pathbank-primary-2019-PW002043-SMP0002057 (PW002043.owl, 44,499 bytes, SHA-256 03f2f79e67f9cfc36a279d2bc1c409d75df5b5a5c5952f830422f490429f635f), data/pathways/tetrahydromonapterin-biosynthesis-escherichia-coli.yaml (PathBank:SMP0002057, 16 participants, 3 Rhea reactions, 24 mechanistic edges, 3 SSSOM mappings, 13 references), session provenance, INFRA_TASKS.md, output/sssom/source_mappings.sssom.tsv, and rendered HTML pages.

@realmarcin
realmarcin added this pull request to the merge queue Nov 5, 2026
Merged via the queue into main with commit 9584009 Nov 5, 2026
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@realmarcin
realmarcin deleted the feat/cycle13-stage1-add-records branch November 5, 2026 20:26
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