Code and data-access documentation for spatially resolved ferroptosis-associated states in glioblastoma.
Computational analysis of single-nucleus ATAC-seq data to identify cell-type-specific MASLD-associated regulatory peaks not captured by liver eQTLs and link them to candidate genes using ABC, developed for HUJI’s Computational Genomics course (76553)
Reproducible figure-generation code for retinal degeneration snRNA-seq and snATAC-seq analysis
Arabidopsis root-tip snRNA-seq and snATAC-seq under osmotic stress, with context for Project 1 BRL3 × drought genes.
SSc skin yields six times fewer fibroblast nuclei than healthy skin in GSE312129, a composition confound for any between-group claim from that dataset.
snRNA+snATAC multiome of AD DLPFC microglia — chromVAR motif analysis, WNN integration, peak-to-gene linkage, Monocle3 trajectory | Signac · Seurat · R
A tool for single cell genomics data processing and analysis
Providing an easy way to extract the raw data from archR snATACSeq objects to produce in house visualizations of the results
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