#
qualimap
Here are 4 public repositories matching this topic...
Automated Bash pipeline for variant analysis in family trio. From raw FASTQ to VCFs. Supports Mendelian inheritance models (AR, de novo, AD) using Bowtie2, FreeBayes, Bedtools and BCFtools. Includes integrated QC reports (FastQC, Qualimap, MultiQC).
bioinformatics genomics variant-calling bedtools samtools bcftools bowtie2 fastqc freebayes qualimap
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May 6, 2026 - Shell
Pipeline for automated genomic variant analysis in inherited diseases, integrating alignment, variant calling, and quality control
bioinformatics pipeline genomics ngs computational-biology vcf multiqc variant-calling genetic-analysis bedtools samtools bowtie2 fastqc freebayes qualimap
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Updated
May 22, 2024 - Shell
Reproducible RNA-seq alignment & QC pipeline for S. cerevisiae — HISAT2, RSeQC, Qualimap, MultiQC
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Updated
Jul 11, 2026 - HTML
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