motif-finding

This application searches inside a text sequence for words that resemble those inside a list of similar words.

A React component to sketch / search for network motifs.

This is a scanner designed to recognise DNA motifs within a long stretch of DNA. It uses two models for discrimination, one model representing the target and the second model representing the background.

Discovering Leitmotifs in Multidimensional Time Series

Finding Network Motifs Using MCMC Sampling

Example implementation of "Mueen's Algorithm for Similarity Search" (aka MASS) for ESP32

Automatic Motif Detection wrapper for dotmotif

Gibby is a Python package designed to find the motif of a transcription factor de novo based on ChIP-seq data.

Scans TF binding sites based on motifs.

Motif Finding using Gibbs Sampler

Motif Finding through Gibbs Sampling

Python solutions to 150 Rosalind bioinformatics problems for learning purposes.

A robust Python-based bioinformatics tool for comprehensive DNA sequence analysis and manipulation.

R script for finding and scoring motifs in small genomes using position-frequency tables

Coding problems from course 1 of the Bioinformatics specialization

Augmented Gibbs Sampler for DNA motif finding in M. tuberculosis — comparing simulated annealing, entropy scoring, and greedy warm starts

DNA sequence analysis toolkit with GUI and CLI.

A Python GUI application for biological sequence comparison using the Longest Common Subsequence (LCS) algorithm with motif discovery and similarity analysis.

Object-oriented Python tool for visualizing regulatory motifs (with IUPAC ambiguity codes) on gene models