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Python · pairwise alignment · dN/dS · UPGMA phylogeny — Genomic surveillance for Cotton Leaf Curl Virus on real NCBI GenBank sequences: which variant is rising and is that real, is anything selecting for it, and how are strains related. Collapsing clonal duplicates turned 9 'emerging variants' into 0. 101 tests, zero dependencies.

  • Updated Oct 17, 2026
  • Python

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