dereplication

Here are 6 public repositories matching this topic...

refresh-bio / vclust

Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes

clustering viruses taxonomic-classification dereplication average-nucleotide-identity sequence-similarity genome-sequence bacteriophages

Updated Jul 7, 2026
Python

novak-jiri / cyclobranch

Star

A tool for mass spectrometry data analysis.

bioinformatics metabolomics mass-spectrometry lc-ms ms-data imaging peptide-identification peptides mzml image-fusion desi-msi imzml de-novo dereplication mass-spectrometry-imaging bioinformatics-tool maldi-msi

Updated Aug 21, 2023
C++

JJChenCharly / OrthoSLC

Star

OrthoSLC: A pipeline to get Orthologous Genes using Reciprocal Best Blast Hit (RBBH) Single Linkage Clustering, indenpendent of relational database management system

lightweight bioinformatics genomics jupyter-notebook large-scale single-linkage-clustering large-dataset pan-genome core-genome dereplication pre-compiled reciprocal-blast-hits microbe-subspecies independent-of-mysql cpp-callable-binary convenient-installation

Updated Feb 17, 2026
Jupyter Notebook

clzani / DEREP-NP

Star

Repository for files related to DEREP-NP dereplication database

database knime mass-spectrometry nmr-spectroscopy substructure dereplication derep-np hsqc natural-products structure-elucidation medicinal-plants unpd datawarrior

Updated Jun 21, 2021

ClavelLab / maldipickr

Star

Dereplicate And Cherry-pick Mass Spectrometry Spectra

r rstats cherry-pick maldi-tof-ms dereplication r-packages

Updated Jun 23, 2026
R

GeoGenetics / ngs-derep

Star

Ancient Environmental DNA dereplication workflow module

snakemake ngs edna dereplication

Updated Aug 24, 2026
Python

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