code-ocean

Code Ocean pipeline for MOSuite

Code Ocean pipeline: exaSPIM neuron reconstructions to CCF space, one AIND derived asset per neuron

Code Ocean capsule for MOSuite - clean raw counts

Code Ocean capsule for MOSuite - Plot Volcano Enhanced

Processing and packaging of exaSPIM neuron SWC reconstructions into per-cell AIND derived data assets.

Code Ocean capsule for MOSuite - batch correct counts

Code Ocean capsule for MOSuite - plot PCA 2D

Code Ocean capsule for MOSuite - normalize counts

Code Ocean capsule for MOSuite - plot volcano summary

Code Ocean capsule for MOSuite - filter differential expression analysis results

Code Ocean capsule for MOSuite - write multiOmicDataSet properties

Code Ocean capsule for MOSuite - Plot Venn Diagram

Code Ocean capsule for MOSuite - create multiOmicDataset from csv/tsv files

Code Ocean capsule for MOSuite - plot PCA 3D

Code Ocean capsule: packages exaSPIM SWC pipeline outputs into per-cell AIND derived data assets.

Code Ocean capsule for MOSuite - filter low counts

Code Ocean capsule for MOSuite - differential expression analysis

A test repository for Code Ocean and GitHub repository integration

Code Ocean capsule for MOSuite - plot expression heatmap

Code Ocean capsule: transforms exaSPIM SWC reconstructions into CCF space.