This repo contains Bioinformatics lecture notes using Biopython.
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Oct 21, 2026 - Jupyter Notebook
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biopython-library
Here are 27 public repositories matching this topic...
Biobridge is a Python library for simulating biological processes and systems also analyzing them, visualising them, and interacting with them.
python learning flask library cpu database analysis simulation biology machine pypi realtime jupyter-notebook python3 biopython bridge biopython-library pypi-package
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Feb 21, 2026 - Python
Machine Learning on Protein Molecule Sequence
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Aug 8, 2019 - Jupyter Notebook
GPU accllerated program for Neighbor-Joining algorithm of Biopython library with PyCUDA
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Oct 1, 2019 - Python
Website contains phylogenetic network of SARS-CoV-2 genomes sampled from across the world. These genomes are closely related and under evolutionary selection in their human hosts The problem is that the usual sites that shows or talks about that topic are complicated for the people who have not studied this kind of materials related to genomics …
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May 11, 2022 - CSS
Protein Synthesis Project Using Python, BioPython, and BioSQL
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Mar 17, 2015 - Python
Optimization of operations from pairwise2 module in Biopython library
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Jan 29, 2017 - Jupyter Notebook
Explore the project, where the complete sequence alignment is visually presented. This concise visualization offers a clear understanding of the differences between the reference and delta variant sequences. Dive into this comparative study to gain insights into the genomic variations and evolutionary dynamics of these prominent strains.
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Mar 29, 2024 - Jupyter Notebook
Python-based bioinformatics toolkit for DNA sequence analysis using the BRCA1 reference sequence.
python bioinformatics genomics fasta ncbi biopython-library sequence-analysis numpy-library pandas-python metplotlib brca1
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Jul 9, 2026 - Python
AI-powered codon usage analysis & optimization platform integrating machine learning, SHAP explainability, and Burrows–Wheeler Transform (BWT) features for biologically informed codon recommendation.
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Jul 20, 2026 - Jupyter Notebook
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May 13, 2019 - HTML
Script for sorting FASTA sequences by clade in a given tree topology.
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Jan 14, 2021 - Python
This program takes in a .gb file (Genome Bank file) and creates a record with all of the features of the genome to create a Circular Genome Diagram.
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Feb 1, 2021 - Python
Biopython for aligning sequences
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Sep 4, 2025 - Jupyter Notebook
Bioinformatics Algorithms is a discipline at my university that aims to provide knowledge about manipulating DNA and RNA sequences using Python.
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Sep 8, 2024 - Python
Scripts to automate general time-consuming tasks
python scraper automation pandas pubmed clinical-trials beautifulsoup biopython-library data-parsing data-aggregation api-integration etl-automation json-data-handling
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Aug 9, 2024 - Jupyter Notebook
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