Research skills for Claude Code, Codex, and OpenCode.
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Sep 30, 2026 - Python
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binder-design
Here are 17 public repositories matching this topic...
Multi-target protein binder design for specificity and cross-reactivity.
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Sep 10, 2026 - Python
AI-agent toolkit for structural biology: design binders, map structures, screen candidates, rank results, and prepare cloud-scale runs.
bioinformatics structural-biology protein-structure computational-biology open-science cloud-computing drug-discovery screening cryo-em protein-design workflow-automation structure-prediction ai-agents protein-engineering protein-folding molecular-modeling runpod agentic-ai binder-design
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Oct 12, 2026 - Python
OIH: autonomous LLM-agent platform for computational binder design and ADC prioritization
computational-biology drug-discovery protein-design alphafold llm-agent binder-design antibody-drug-conjugate
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Apr 14, 2026 - Python
A curated, actively-updated list of AI/deep-learning papers, libraries, etc for digital biology: protein folding, binder & antibody design, molecular generation, genomics & single-cell foundation models, datasets, and tools.
awesome-list life-sciences digital-biology protien-folding boltzgen binder-design protien-structure-prediction
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Nov 2, 2026 - Python
QC and tag-site scoring for designed protein binders from predicted complexes.
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Nov 1, 2026 - Python
ProteaFlow — de novo protein binder and small molecule design using 10 generative tools. Automated validation, scoring, and ranking pipeline. Intuitive web interface for job submission, live monitoring, and interactive result exploration — no coding required.
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Oct 15, 2026 - Python
Run molecular AI models locally with one command: Boltz-2, RFD4-Proteina, BindCraft2, DiffDock-L, ProteinMPNN, OpenDDE. Protein structure prediction, binder design and docking on Apple Silicon, Linux/NVIDIA or your own Runpod GPU. Works with Claude Code and Codex.
cli bioinformatics structural-biology cuda computational-biology drug-discovery protein-design protein-folding protein-structure-prediction molecular-docking alphafold apple-silicon boltz runpod ai-for-science diffdock claude-code proteinmpnn binder-design
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Oct 28, 2026 - TypeScript
BoltzGen MCP server for protein binder design
bioinformatics deep-learning mcp protein-design protein-engineering model-context-protocol binder-design
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Sep 27, 2026 - Python
BindCraft MCP server for de novo protein binder design
bioinformatics deep-learning mcp protein-design protein-engineering model-context-protocol binder-design
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Feb 22, 2026 - Python
In-silico protein design bench: takes a target + epitope to designed, structurally validated, developable binders and multivalent scaffolds. Composes the binder-design, developability-hardening, and multivalent-display skills with the structure-model
structural-biology protein-design ai-agents claude de-novo-design alphafold rfdiffusion proteinmpnn binder-design claude-science
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Jul 13, 2026 - Python
Query the Human Bindome for BindCraft binder candidates by target.
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Aug 31, 2026 - Python
A Nextflow workflow for protein binder design and screening.
bioinformatics nextflow structural-biology computational-biology protein-design structural-bioinformatics alphafold2 colabfold rfdiffusion proteinmpnn binder-design
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Oct 9, 2026 - Python
AI-guided Nipah virus glycoprotein G binder designs submitted to ProteinBase, with reproducible filtering from generated candidates to final selected proteins.
computational-biology dataset protein-design rfdiffusion proteinmpnn boltzgen binder-design protein-binders nipah-virus
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Jun 11, 2026
Plan and design binders in Codex: pick target sites, tools and comp bio budget, then get your structures and sequences.
bioinformatics structural-biology protein-structure computational-biology scientific-computing drug-discovery codex protein-design structure-prediction biotechnology protein-engineering molecular-modeling ai-for-science generative-biology codex-plugin binder-design protein-binder-design protein-binders
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Sep 1, 2026 - Python
Gradient-based design of small-molecule-binding proteins
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Oct 3, 2026 - Python
Model-agnostic protocol, replay, ranking-audit and LLM decision-evaluation toolkit for protein binder design campaigns. No protein models, no GPU, CPU-only; built on OpenScience workflow contracts.
bioinformatics provenance reproducibility protein-design llm-evaluation claude-code research-workflow binder-design
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Aug 20, 2026 - Python
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