autophagy

Cellular autophagy index estimation, glycogen depletion kinetics, autophagy onset curve, insulin clamp proxy, and fast duration optimization. Built for GenPark (https://www.genpark.ai).

Cellular autophagy index estimation, glycogen depletion kinetics, autophagy onset curve, insulin clamp proxy, and fast duration optimization. Built for GenPark (https://www.genpark.ai).

Code for the Cancers paper (Functional Linkage of RKIP to the Epithelial to Mesenchymal Transition and Autophagy during the Development of Prostate Cancer)

RAPSAP is a comprehensive archive of protein structures that pertain specifically to autophagy, aimed at improving structural understanding of the biological process

Code for the Oncotarget paper (Systematic characterization of autophagy-related genes during the adipocyte differentiation using public-access data.)

Pipeline for high-throughput analysis of RFP/GFP ratios in vacuoles

Free Android open-source app that tracks what your body is doing while fasting

Code for the IJMS paper (Co-Expression Network Analysis of AMPK and Autophagy Gene Products during Adipocyte Differentiation)

Experimental brainwave entrainment goggles (Dementia / Mentalhealth).

Deterministic, explainable autophagy/lysosome dependency QC for single-cell expression data.

Experiments and scripts used to prepare CELLULAR, a dataset consisting of cells undergoing autophagy.

A Hub of central Human ATG genes (autophagy-related genes) based on recurrences in various databases on Autophagy

A research compendium: Transcriptional regulation of autophagy during adipocyte differentiation

Research compendium for the preprint "Hierarchical Regulation of Autophagy During Adipocyte Differentiation"

Code for the Cells paper (Transcriptional Regulation of Autophagy Genes via Stage-Specific Activation of CEBPB and PPARG during Adipogenesis)

Python-scripted Blender + Molecular Nodes scenes of the plant vacuole membrane: V-ATPase and the ATG12–ATG5–ATG16 complex

Code for the book chapter (Anti-cancer effect of RKIP via modulating autophagy during metastasis)

Code for the (unpublished) paper ( Regulation of autophagy in response to oxidative stress)

Scripts for reproducing the poster: Co-regulation of RKIP and autophagy genes by VEZF1 and ERCC6 in prostate cancer