Update from update/software-2026-08-16

database/github/Andrei-EPFL/HODOR/metadata.json

@@ -0,0 +1,34 @@
+{
+    "parser": "github",
+    "uid": "github/Andrei-EPFL/HODOR",
+    "url": "https://github.com/Andrei-EPFL/HODOR",
+    "data": {
+        "doi": [
+            "https://scixplorer.org/abs/2024MNRAS.52711539V",
+            "https://ui.adsabs.harvard.edu/abs/2026ascl.soft06016V/abstract"
+        ],
+        "title": "HODOR: Halo Occupation Distribution Optimization Routine",
+        "url": "https://github.com/Andrei-EPFL/HODOR",
+        "name": "HODOR",
+        "full_name": "Andrei-EPFL/HODOR",
+        "html_url": "https://github.com/Andrei-EPFL/HODOR",
+        "description": "HOD Optimization Routine",
+        "created_at": "2022-12-09T14:17:53Z",
+        "updated_at": "2025-08-14T14:47:25Z",
+        "clone_url": "https://github.com/Andrei-EPFL/HODOR.git",
+        "size": 370,
+        "stargazers_count": 3,
+        "watchers_count": 3,
+        "language": "Python",
+        "open_issues_count": 3,
+        "subscribers_count": 3,
+        "owner": {
+            "html_url": "https://github.com/Andrei-EPFL",
+            "avatar_url": "https://avatars.githubusercontent.com/u/55141699?v=4",
+            "login": "Andrei-EPFL",
+            "type": "User"
+        },
+        "timestamp": "2026-08-16 00:38:08.140074",
+        "avatar": "https://avatars.githubusercontent.com/u/55141699?v=4"
+    }
+}

database/github/Axect/Peroxide/metadata.json

@@ -0,0 +1,60 @@
+{
+    "parser": "github",
+    "uid": "github/Axect/Peroxide",
+    "url": "https://github.com/Axect/Peroxide",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.21754256",
+        "name": "Peroxide",
+        "url": "https://github.com/Axect/Peroxide",
+        "full_name": "Axect/Peroxide",
+        "html_url": "https://github.com/Axect/Peroxide",
+        "description": "Rust numeric library with high performance and friendly syntax",
+        "created_at": "2018-04-20T18:38:06Z",
+        "updated_at": "2026-08-15T18:18:15Z",
+        "clone_url": "https://github.com/Axect/Peroxide.git",
+        "homepage": "https://crates.io/crates/peroxide",
+        "size": 14580,
+        "stargazers_count": 724,
+        "watchers_count": 724,
+        "language": "Rust",
+        "open_issues_count": 11,
+        "license": {
+            "key": "apache-2.0",
+            "name": "Apache License 2.0",
+            "spdx_id": "Apache-2.0",
+            "url": "https://api.github.com/licenses/apache-2.0",
+            "node_id": "MDc6TGljZW5zZTI="
+        },
+        "subscribers_count": 15,
+        "owner": {
+            "html_url": "https://github.com/Axect",
+            "avatar_url": "https://avatars.githubusercontent.com/u/17744450?v=4",
+            "login": "Axect",
+            "type": "User"
+        },
+        "topics": [
+            "rust",
+            "scientific-computing",
+            "linear-algebra",
+            "matrix",
+            "statistics",
+            "matlab",
+            "interpolation",
+            "spline",
+            "determinant",
+            "r",
+            "peroxide",
+            "jacobian",
+            "simd-openblas",
+            "rust-numeric-library",
+            "regression",
+            "optimization",
+            "numerical-analysis",
+            "dataframe",
+            "numerical-integration",
+            "ordinary-differential-equations"
+        ],
+        "timestamp": "2026-08-16 00:38:43.582674",
+        "avatar": "https://avatars.githubusercontent.com/u/17744450?v=4"
+    }
+}

database/github/BehRoooz/proseqgo/metadata.json

@@ -0,0 +1,48 @@
+{
+    "parser": "github",
+    "uid": "github/BehRoooz/proseqgo",
+    "url": "https://github.com/BehRoooz/proseqgo",
+    "data": {
+        "name": "proseqgo",
+        "url": "https://github.com/BehRoooz/proseqgo",
+        "full_name": "BehRoooz/proseqgo",
+        "html_url": "https://github.com/BehRoooz/proseqgo",
+        "private": false,
+        "description": "End-to-end MLOps platform for protein function prediction (sequence -> embedding -> 1D CNN -> GO terms), with model lifecycle management, secured gateway routing, and production-oriented monitoring.",
+        "created_at": "2026-03-24T13:21:49Z",
+        "updated_at": "2026-08-09T15:41:40Z",
+        "clone_url": "https://github.com/BehRoooz/proseqgo.git",
+        "homepage": "proseqgo.com",
+        "size": 29049,
+        "stargazers_count": 0,
+        "watchers_count": 0,
+        "language": "Python",
+        "open_issues_count": 0,
+        "license": null,
+        "subscribers_count": 0,
+        "owner": {
+            "html_url": "https://github.com/BehRoooz",
+            "avatar_url": "https://avatars.githubusercontent.com/u/32821144?v=4",
+            "login": "BehRoooz",
+            "type": "User"
+        },
+        "topics": [
+            "1d-cnn",
+            "embedding-models",
+            "bioinformatics",
+            "data-science",
+            "fastapi",
+            "grafana",
+            "mlflow",
+            "mlops",
+            "monitoring",
+            "nginx",
+            "prometheus",
+            "streamlit",
+            "protein-function-predictor",
+            "protein"
+        ],
+        "timestamp": "2026-08-16 00:39:18.541956",
+        "avatar": "https://avatars.githubusercontent.com/u/32821144?v=4"
+    }
+}

database/github/Breeding-Insight/viewpoly/metadata.json

@@ -0,0 +1,39 @@
+{
+    "parser": "github",
+    "uid": "github/Breeding-Insight/viewpoly",
+    "url": "https://github.com/Breeding-Insight/viewpoly",
+    "data": {
+        "name": "viewpoly",
+        "url": "https://github.com/Breeding-Insight/viewpoly",
+        "full_name": "Breeding-Insight/viewpoly",
+        "html_url": "https://github.com/Breeding-Insight/viewpoly",
+        "private": false,
+        "description": "R package to visualize genetic maps and QTL analysis.",
+        "created_at": "2026-05-30T19:04:43Z",
+        "updated_at": "2026-07-16T16:10:51Z",
+        "clone_url": "https://github.com/Breeding-Insight/viewpoly.git",
+        "homepage": null,
+        "size": 226984,
+        "stargazers_count": 0,
+        "watchers_count": 0,
+        "language": "R",
+        "open_issues_count": 0,
+        "license": {
+            "key": "gpl-3.0",
+            "name": "GNU General Public License v3.0",
+            "spdx_id": "GPL-3.0",
+            "url": "https://api.github.com/licenses/gpl-3.0",
+            "node_id": "MDc6TGljZW5zZTk="
+        },
+        "subscribers_count": 0,
+        "owner": {
+            "html_url": "https://github.com/Breeding-Insight",
+            "avatar_url": "https://avatars.githubusercontent.com/u/57234414?v=4",
+            "login": "Breeding-Insight",
+            "type": "Organization"
+        },
+        "topics": [],
+        "timestamp": "2026-08-16 00:39:16.018050",
+        "avatar": "https://avatars.githubusercontent.com/u/57234414?v=4"
+    }
+}

database/github/CMBSciPol/furax/metadata.json

@@ -0,0 +1,43 @@
+{
+    "parser": "github",
+    "uid": "github/CMBSciPol/furax",
+    "url": "https://github.com/CMBSciPol/furax",
+    "data": {
+        "doi": [
+            "https://scixplorer.org/abs/2026PhRvD.114b3543T",
+            "https://scixplorer.org/abs/2026arXiv260319600C",
+            "https://ui.adsabs.harvard.edu/abs/2026ascl.soft08002C/abstract"
+        ],
+        "title": "Furax: JAX framework for CMB inverse-problem analysis",
+        "url": "https://github.com/CMBSciPol/furax",
+        "name": "furax",
+        "full_name": "CMBSciPol/furax",
+        "html_url": "https://github.com/CMBSciPol/furax",
+        "description": "Framework for Unified and Robust data Analysis with JAX",
+        "created_at": "2024-11-20T09:11:37Z",
+        "updated_at": "2026-08-07T15:27:10Z",
+        "clone_url": "https://github.com/CMBSciPol/furax.git",
+        "homepage": "https://furax.readthedocs.io/en/stable",
+        "size": 43779,
+        "stargazers_count": 9,
+        "watchers_count": 9,
+        "language": "Python",
+        "open_issues_count": 16,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 2,
+        "owner": {
+            "html_url": "https://github.com/CMBSciPol",
+            "avatar_url": "https://avatars.githubusercontent.com/u/139854021?v=4",
+            "login": "CMBSciPol",
+            "type": "Organization"
+        },
+        "timestamp": "2026-08-16 00:37:41.835399",
+        "avatar": "https://avatars.githubusercontent.com/u/139854021?v=4"
+    }
+}

database/github/ColmTalbot/wcosmo/metadata.json

@@ -0,0 +1,42 @@
+{
+    "parser": "github",
+    "uid": "github/ColmTalbot/wcosmo",
+    "url": "https://github.com/ColmTalbot/wcosmo",
+    "data": {
+        "doi": [
+            "https://scixplorer.org/abs/2026MNRAS.550g1046B",
+            "https://ui.adsabs.harvard.edu/abs/2026ascl.soft07006T/abstract"
+        ],
+        "title": "wcosmo: Backend agnostic cosmology tools",
+        "url": "https://github.com/ColmTalbot/wcosmo",
+        "name": "wcosmo",
+        "full_name": "ColmTalbot/wcosmo",
+        "html_url": "https://github.com/ColmTalbot/wcosmo",
+        "description": "Backend agnostic cosmology tools",
+        "created_at": "2024-05-13T21:58:30Z",
+        "updated_at": "2026-06-25T18:02:42Z",
+        "clone_url": "https://github.com/ColmTalbot/wcosmo.git",
+        "homepage": "https://wcosmo.readthedocs.io/en/latest/",
+        "size": 21003,
+        "stargazers_count": 7,
+        "watchers_count": 7,
+        "language": "Python",
+        "open_issues_count": 6,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 2,
+        "owner": {
+            "html_url": "https://github.com/ColmTalbot",
+            "avatar_url": "https://avatars.githubusercontent.com/u/25602909?v=4",
+            "login": "ColmTalbot",
+            "type": "User"
+        },
+        "timestamp": "2026-08-16 00:37:59.175715",
+        "avatar": "https://avatars.githubusercontent.com/u/25602909?v=4"
+    }
+}

database/github/Cristianetaniguti/Qploidy/metadata.json

@@ -0,0 +1,39 @@
+{
+    "parser": "github",
+    "uid": "github/Cristianetaniguti/Qploidy",
+    "url": "https://github.com/Cristianetaniguti/Qploidy",
+    "data": {
+        "name": "Qploidy",
+        "url": "https://github.com/Cristianetaniguti/Qploidy",
+        "full_name": "Cristianetaniguti/Qploidy",
+        "html_url": "https://github.com/Cristianetaniguti/Qploidy",
+        "private": false,
+        "description": "Estimates individuals ploidy, aneuploidy and large-scale CNV based on genetic markers",
+        "created_at": "2023-07-03T17:35:02Z",
+        "updated_at": "2026-08-15T18:08:31Z",
+        "clone_url": "https://github.com/Cristianetaniguti/Qploidy.git",
+        "homepage": "",
+        "size": 93615,
+        "stargazers_count": 7,
+        "watchers_count": 7,
+        "language": "R",
+        "open_issues_count": 0,
+        "license": {
+            "key": "agpl-3.0",
+            "name": "GNU Affero General Public License v3.0",
+            "spdx_id": "AGPL-3.0",
+            "url": "https://api.github.com/licenses/agpl-3.0",
+            "node_id": "MDc6TGljZW5zZTE="
+        },
+        "subscribers_count": 2,
+        "owner": {
+            "html_url": "https://github.com/Cristianetaniguti",
+            "avatar_url": "https://avatars.githubusercontent.com/u/7572527?v=4",
+            "login": "Cristianetaniguti",
+            "type": "User"
+        },
+        "topics": [],
+        "timestamp": "2026-08-16 00:39:17.315965",
+        "avatar": "https://avatars.githubusercontent.com/u/7572527?v=4"
+    }
+}

database/github/Cristianetaniguti/onemap/metadata.json

@@ -0,0 +1,33 @@
+{
+    "parser": "github",
+    "uid": "github/Cristianetaniguti/onemap",
+    "url": "https://github.com/Cristianetaniguti/onemap",
+    "data": {
+        "name": "onemap",
+        "url": "https://github.com/Cristianetaniguti/onemap",
+        "full_name": "Cristianetaniguti/onemap",
+        "html_url": "https://github.com/Cristianetaniguti/onemap",
+        "private": false,
+        "description": "Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses",
+        "created_at": "2017-06-22T19:13:05Z",
+        "updated_at": "2026-08-10T12:35:13Z",
+        "clone_url": "https://github.com/Cristianetaniguti/onemap.git",
+        "homepage": "https://cran.r-project.org/web/packages/onemap/index.html",
+        "size": 159438,
+        "stargazers_count": 6,
+        "watchers_count": 6,
+        "language": "R",
+        "open_issues_count": 2,
+        "license": null,
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/Cristianetaniguti",
+            "avatar_url": "https://avatars.githubusercontent.com/u/7572527?v=4",
+            "login": "Cristianetaniguti",
+            "type": "User"
+        },
+        "topics": [],
+        "timestamp": "2026-08-16 00:39:16.651676",
+        "avatar": "https://avatars.githubusercontent.com/u/7572527?v=4"
+    }
+}

database/github/DR-algo/DRalgo/metadata.json

@@ -0,0 +1,41 @@
+{
+    "parser": "github",
+    "uid": "github/DR-algo/DRalgo",
+    "url": "https://github.com/DR-algo/DRalgo",
+    "data": {
+        "doi": [
+            "https://scixplorer.org/abs/2023CoPhC.28808725E",
+            "https://ui.adsabs.harvard.edu/abs/2026ascl.soft07008E/abstract"
+        ],
+        "title": "DRalgo: Dimensionally reduced high-temperature effective field theories",
+        "url": "https://github.com/DR-algo/DRalgo",
+        "name": "DRalgo",
+        "full_name": "DR-algo/DRalgo",
+        "html_url": "https://github.com/DR-algo/DRalgo",
+        "description": "DRalgo is an algorithmic implementation that constructs an effective, dimensionally reduced, high-temperature field theory for generic models.",
+        "created_at": "2022-05-16T09:28:55Z",
+        "updated_at": "2026-05-14T21:28:42Z",
+        "clone_url": "https://github.com/DR-algo/DRalgo.git",
+        "size": 5697,
+        "stargazers_count": 18,
+        "watchers_count": 18,
+        "language": "Wolfram Language",
+        "open_issues_count": 22,
+        "license": {
+            "key": "gpl-3.0",
+            "name": "GNU General Public License v3.0",
+            "spdx_id": "GPL-3.0",
+            "url": "https://api.github.com/licenses/gpl-3.0",
+            "node_id": "MDc6TGljZW5zZTk="
+        },
+        "subscribers_count": 2,
+        "owner": {
+            "html_url": "https://github.com/DR-algo",
+            "avatar_url": "https://avatars.githubusercontent.com/u/105362542?v=4",
+            "login": "DR-algo",
+            "type": "Organization"
+        },
+        "timestamp": "2026-08-16 00:37:57.934467",
+        "avatar": "https://avatars.githubusercontent.com/u/105362542?v=4"
+    }
+}