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production-pipelines
production-pipelines PublicGenomics workflows for CPG using Hail Batch
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ClinvArbitration
ClinvArbitration PublicA side-project from the AIP, containing the code, logic, and documentation for the ClinVar consequence reassessment process in use at the CPG
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cpg-cost-control
cpg-cost-control PublicA Cloud Function to handle GCP billing budget notifications.
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cpg-infrastructure
cpg-infrastructure PublicThis repository is used to manage the infrastructure at the CPG
Repositories
- semantic-code-review Public
LLM-augmented local-diff and GitHub-PR reviewer with foldable semantic diffs and round-trip inline comments.
- weaver-data-provider Public
Reference data for hgvs-weaver: gene bundles built from NCBI's published alignments, and the DataProvider that reads them
- hgvs-weaver Public
- cpg-flow-lrs-annotation Public
For creating annotated callsets for seqr from long-read-sequencing data
- drop Public Forked from nf-core/drop
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
- cpg-flow-rdrnaseq Public
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