Data preprocessing for the Oxygen DEpletion Model (ODEM)
remotes::install_github("jsta/odem.data")# build odem input data for a specific lake using R
lake_id <- "nhdhr_34132539"
source("analysis/scripts/01_data_merge_sql.R")# or build odem input data for a specific lake using the command line
make analysis/data/143249470_Mendota/input.txt
# build odem input data for all lakes using the command line
make all-
temperature:
pball_*_temperatures.csv -
meteorology:
NLDAS_*.csv -
water quality data from LTER:
wq_data_*.csv -
nml file :
nhdhr_*.nml
| variable |
|---|
| datetime |
| thermocline_depth |
| temperature_epi |
| temperature_hypo |
| temperature_total |
| volume_total |
| volume_epi |
| volume_hypo |
| area_thermocline |
| area_surface |
| upper_meta |
| lower_meta |
| year |
| day_of_year |
| max.d |
| wind |
| airtemp |
This R-package is still under development and functions are likely to change with future updates. odem.data is maintained by UW-Madison Center for Limnology. All data were obtained from online repositories, e.g. NTL-LTER and the USGS Water Quality Portal. This project is part of the Data Science Initiative at UW-Madison.