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feat: ✨ describe relationship between weeks, visits, and instruments - #224

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feat/create-overview-of-weeks-and-visits
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feat: ✨ describe relationship between weeks, visits, and instruments#224
K-Beicher wants to merge 14 commits into
mainfrom
feat/create-overview-of-weeks-and-visits

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@K-Beicher

@K-Beicher K-Beicher commented Aug 5, 2026

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Description

Very first draft of the description of the instrument and how they relate to weeks. I expect that there is a lot of questions that will arise from this.

I've avoided the whole making it a csv file for now by splitting the markdown table into two, it felt more important to get the text out for commenting than getting the repo to accept python code.

Closes #220

Needs a lot of comments on what I'm missing and what is unclear.

Checklist

  • Ran just run-all

@K-Beicher K-Beicher self-assigned this Aug 5, 2026
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K-Beicher requested a review from a team as a code owner August 5, 2026 12:35
@K-Beicher K-Beicher linked an issue Aug 5, 2026 that may be closed by this pull request
@K-Beicher K-Beicher moved this from Todo to In Review in Data development Aug 5, 2026

@lwjohnst86 lwjohnst86 left a comment

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Here's some initial comments :)

Comment thread supplemental/weeks_instruments.csv Outdated
Comment thread supplemental/weeks_instruments.csv Outdated
Comment thread supplemental/weeks_instruments.csv Outdated
Comment thread supplemental/weeks_instruments.csv Outdated
Comment thread supplemental/weeks-visits.qmd Outdated
Comment thread supplemental/weeks-visits.qmd Outdated
Comment thread supplemental/weeks-visits.qmd Outdated
Comment thread supplemental/weeks-visits.qmd Outdated
Comment thread supplemental/weeks-visits.qmd
Comment thread supplemental/weeks-visits.qmd Outdated
@github-project-automation github-project-automation Bot moved this from In Review to In Progress in Data development Aug 5, 2026
Comment thread supplemental/weeks-visits.qmd
Comment thread supplemental/weeks-visits.qmd Outdated
Comment thread supplemental/weeks-visits.qmd Outdated
Comment thread supplemental/weeks-visits.qmd Outdated
Comment thread supplemental/weeks_instruments.csv Outdated
Comment thread supplemental/weeks_instruments.csv Outdated
Comment on lines +67 to +88
No week,,stamdata,"Running updates throughout weeks 1-52
This form will contain basic information about the participant as well as information about drop-out or completion of study"
No week,,adverse_events,"Anytime throughout weeks 1-52
This form will register any adverse event the participant experience throughout the study, the form has a date of completion and the dates of the event"
No week,,fase_1_ditetiske_afvigelser,"Anytime through weeks 1-11
This form will register any deviation from the NUPO diet, the form has a date of completion and the dates of the event"
No week,,fase_2_ditetiske_afvigelser,"Anytime through weeks 12-18
This form will register any deviation from the reintroduction of normal meals, the form has a date of completion and the dates of the event"
No week,,fase_3_ditetiske_afvigelser,"Anytime after week 18
This form will register any deviation from the recommended diet, the form has a date of completion and the dates of the event"
No week,,trningsafvigelser,"Anytime after week 18
This form will register any deviation from the recommended exercise, the form has a date of completion and the dates of the event"
No week,,ekstra_kontakt,"Anytime throughout weeks 1-52
This form will capture any contact between study staff and the participant that falls outside the standard touch points. The form as a date for the contact and it is expected that the form is completed on the day of the contact."
No week,,hba1c_follow_up,"Anytime throughout weeks 1-52
This form will register any extra HbA1c testing done at the lab if the study team suspects that there is a problem, the form as a date for the testing"
No week,,medicine_changes,"Anytime throughout weeks 1-52
This form will register any changes to medicine during the study, the form has a date for the capture of the information"
No week,,individual_ditistsamtale_1,At some point between weeks 18 and 50
No week,,individual_ditistsamtale_2,At some point between weeks 18 and 50
No week,,individual_ditistsamtale_3,At some point between weeks 18 and 50
No week,,individual_ditistsamtale_4,At some point between weeks 18 and 50

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I think most of them have a date

K-Beicher and others added 4 commits August 6, 2026 10:54
Co-authored-by: Luke W. Johnston <lwjohnst86@users.noreply.github.com>
Co-authored-by: Luke W. Johnston <lwjohnst86@users.noreply.github.com>
@lwjohnst86 lwjohnst86 changed the title docs: first draft of the relation between weeks and instruments feat: ✨ describe relationship between weeks, visits, and instruments Aug 6, 2026
@lwjohnst86 lwjohnst86 changed the title feat: ✨ describe relationship between weeks, visits, and instruments feat: ✨ describe relationship between weeks, visits, and instruments Aug 6, 2026
@K-Beicher K-Beicher moved this from In Progress to In Review in Data development Aug 6, 2026

@lwjohnst86 lwjohnst86 left a comment

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Nice updates ☺️ some more suggested changes

Comment thread supplemental/weeks-visits.qmd Outdated
Comment thread supplemental/weeks-visits.qmd Outdated
Comment thread supplemental/weeks-visits.qmd Outdated
Comment thread supplemental/weeks-visits.qmd Outdated
Comment thread supplemental/weeks_instruments.csv Outdated
Comment thread supplemental/weeks_instruments.csv Outdated
@github-project-automation github-project-automation Bot moved this from In Review to In Progress in Data development Aug 10, 2026
K-Beicher and others added 2 commits August 12, 2026 10:13
Co-authored-by: Luke W. Johnston <lwjohnst86@users.noreply.github.com>
@K-Beicher
K-Beicher requested a review from lwjohnst86 August 12, 2026 09:20
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@lwjohnst86 I think I've covered all your comments although I have a feeling I may have marked one as resolved and then not done it completely.

@K-Beicher K-Beicher moved this from In Progress to In Review in Data development Aug 12, 2026
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Write a doc on weeks vs visits vs events

3 participants