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Nextstrain

Real-time tracking of pathogen evolution

241 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

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ncov ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 408
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 280 139
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 312 172

Repositories

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Showing 10 of 105 repositories

ebola Public
Nextstrain build for Ebola virus

nextstrain/ebola's past year of commit activity

Python 7 11 12 2 Updated Nov 2, 2026
rsv Public
Workflow for RSV analyses on Nextstrain.org

nextstrain/rsv's past year of commit activity

Python 11 8 9 4 Updated Nov 2, 2026
seasonal-flu Public
Scripts. config, and snakefiles for seasonal-flu nextstrain builds

nextstrain/seasonal-flu's past year of commit activity

Python 65 34 28 10 Updated Nov 2, 2026
avian-flu Public
Nextstrain build for avian influenza viruses

nextstrain/avian-flu's past year of commit activity

Python 29 11 18 5 Updated Nov 2, 2026
nextclade_data Public
Datasets for https://github.com/nextstrain/nextclade

nextstrain/nextclade_data's past year of commit activity

Python 47 44 11 20 Updated Nov 2, 2026
rubella Public
Nextstrain build for rubella virus

nextstrain/rubella's past year of commit activity

Python 2 2 7 4 Updated Nov 2, 2026
nextstrain.org Public
The Nextstrain website

nextstrain/nextstrain.org's past year of commit activity

JavaScript 96 AGPL-3.0 58 70 14 Updated Oct 30, 2026
WNV Public
the repository used to build West Nile Virus for nextstrain

nextstrain/WNV's past year of commit activity

Python 5 3 7 1 Updated Oct 30, 2026
auspice Public
Web app for visualizing pathogen evolution

nextstrain/auspice's past year of commit activity

JavaScript 312 AGPL-3.0 172 246 (4 issues need help) 42 Updated Oct 30, 2026
augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur's past year of commit activity

Python 280 AGPL-3.0 139 229 (1 issue needs help) 42 Updated Oct 30, 2026

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Python JavaScript Shell TypeScript C

Most used topics

nextstrain pathogen sars-cov-2 clades ncov

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