Pinned Loading

1. agroscope-ch/plasmopy agroscope-ch/plasmopy Public

   Infection prediction modeling of Plasmopara viticola life cycle stages in vineyards using weather data. This project represents a revisited and customizable Python version of the models used by Agr…

   HTML 1

2. spore_counts_explorer spore_counts_explorer Public

   Rshiny app to manage spore counts data processing, volumetric flow normalisation, scaling, and comparisons.

   R

3. orthophile orthophile Public

   Produce phylogenomic trees with thousands of orthologous gene sequences from OrthoDB. Then only required input is a species list (species must be present in OrthoDB).

   Python 2

4. ncbi-taxonomy-utils ncbi-taxonomy-utils Public

   Collection of Python scripts to deal with NCBI-Taxonomy species names to taxids conversions and vice-versa.

   Python 1

5. infoseq infoseq Public

   Computing sequence (FASTA) summary statistics

   HTML 1

6. evol-feat-snakemake evol-feat-snakemake Public

   Computing cross-species evolutionary features of orthologous genes.

   Python 1