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[0.4.0] add support for Needleman-Wunsch with scores; update Python version support - #23

Merged

andrew-titus merged 21 commits into

mainfrom

nw-scores

Apr 13, 2026

Merged

[0.4.0] add support for Needleman-Wunsch with scores; update Python version support#23
andrew-titus merged 21 commits into
mainfrom
nw-scores

Commits on Apr 6, 2026
- [0.4.0] add support for Needleman-Wunsch with scores; update Python version support
  
  Drew Titus
  and
  claude
  committed
  2e7cfc2
- Lint
  Drew Titus
  committed
  faa9b3a
- Fix lint again?
  Drew Titus
  committed
  e2b9f02
- Replace legacy linting toolchain with ruff and mypy
  
  Drew Titus
  and
  claude
  committed
  4d9d25f
- Modernize linting/testing setup
  Drew Titus
  committed
  38cf334
Commits on Apr 7, 2026
- Simplify linter matrix
  Drew Titus
  committed
  732be0d
- Fix incorrect expected values in needleman_wunsch_with_scores tests
  
  Drew Titus
  and
  claude
  committed
  c772112
- Update CHANGELOG and README for v0.4.0
  
  Drew Titus
  and
  claude
  committed
  4b6ad53
- Update Cargo for pyo3 security vuln and 2024 Rust
  Drew Titus
  committed
  057dec4
- Update CHANGELOG for PyO3/Cargo changes
  
  Drew Titus
  and
  claude
  committed
  80621ef
- Revert Rust edition to 2021, drop maturin extension-module feature, update CHANGELOG
  
  Drew Titus
  and
  claude
  committed
  913a938
- Update pymodule signature for PyO3 0.28 Bound API
  
  Drew Titus
  and
  claude
  committed
  9511248
- Lower stable ABI minimum to Python 3.10 to match requires-python
  
  Drew Titus
  and
  claude
  committed
  b06cebc
- Refactor lint script and Rust NW code; update CHANGELOG
  
  Drew Titus
  and
  claude
  committed
  aebb529
- Lint; update codecov config
  Drew Titus
  committed
  d9350dd
- Add perf test for needleman_wunsch_with_scores
  
  Drew Titus
  and
  claude
  committed
  3f7a306
- Update perf range for CI
  Drew Titus
  committed
  9d805d0
- Lower trials for NW-with-scores
  Drew Titus
  committed
  ca59164
- Adjust mem trials as well
  Drew Titus
  committed
  ee6c671
Commits on Apr 13, 2026
- Change gap from kwarg to arg
  Drew Titus
  committed
  206e5df
- Simplify indexing
  Drew Titus
  committed
  3f949d9

Commits

Commits on Apr 6, 2026

Commits on Apr 7, 2026

Commits on Apr 13, 2026