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Working with image data
🌀
Working with image data
38 followers · 90 following

Achievements

Achievement: Pair ExtraordinaireAchievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair ExtraordinaireAchievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@delivr-ae @Turku-BioImaging

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junelsolis/README.md

Junel Solis, MD, MSc

Image Data Analyst · Turku BioImaging
University of Turku and Åbo Akademi University · Turku, Finland

Website Turku BioImaging on GitHub ORCID Google Scholar LinkedIn Email

I build software for processing and analysing large-scale scientific image data. At Turku BioImaging, I work with researchers and microscopy facilities to turn multi-dimensional image data, from volume electron microscopy to super-resolution light microscopy, into quantitative results using computer vision and reproducible, scalable pipelines.

Current work and research interests

  • Processing of large multi-dimensional image data
  • Application of advanced computer vision technology for cell biology research
  • Volume electron microscopy
  • Super-resolution microscopy image data analysis
  • Management of research image data
  • Remote sensing image data for ecological and agricultural monitoring

Tools

Data and machine learning

Python, NumPy, pandas, Polars, Dask, SciPy, scikit-learn, PyTorch, TensorFlow, seaborn

Workflows and infrastructure

Nextflow, Docker, OpenStack, Linux, Ubuntu, Bash, Git, GitHub, nginx, MySQL, SQLite, VS Code

Web

TypeScript, Vue, Pinia, Tailwind CSS, Sass, PHP, Laravel, Figma

GitHub activity

Junel Solis's GitHub stats Junel Solis's most used languages

Organizations

Turku BioImaging · Finnish Advanced Microscopy Node of Euro-BioImaging(FiAM) · Faculty of Science and Engineering, Åbo Akademi University · Faculty of Medicine, University of Turku

Pinned Loading

  1. Turku-BioImaging/ColonyArea Turku-BioImaging/ColonyArea Public

    ImageJ-plugin that performs standard analysis of colony formation assays conducted in 6- to 24-well dishes.

    ImageJ Macro 2 1

  2. Turku-BioImaging/ome-zarr-io Turku-BioImaging/ome-zarr-io Public

    Write, read and validate OME-Zarr 0.5 images and high-content screen plates.

    Python

  3. Turku-BioImaging/mouse-brain-alignment-tool Turku-BioImaging/mouse-brain-alignment-tool Public

    Python