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jubnr/README.md

👋 Hi, I'm Julie!

I'm a Research Engineer at the Adolphe de Rothschild Foundation Hospital in Paris, in the TITAN team, as part of the Digital Brain Project. I run wearable OPM-MEG experiments to study how the brain processes language in natural settings, and I use AI to decode brain activity.

Before that, I recorded MEG and 7T fMRI at NeuroSpin (CEA/Meta) to decode language from the brain, and at Inria I developed a method to study inter-brain synchrony in children during remote interactions.

🌐 My website · ✍️ LinkedIn · ✉️ jbonnaire@for.paris


🧠 What I work on

  • OPM-MEG: wearable sensors
  • Neuro-AI: decoding language
  • Reproducible pipelines: from raw acquisitions to BIDS, preprocessing and source reconstruction
  • Science communication: explaining neuroscience with interactive tools, animations and blog posts

🛠️ Projects

🧭 NeurExp Tracker · live app Tracks neuroimaging acquisitions (MEG, 3T and 7T MRI) from recruitment to every run. Works fully offline: no data leaves the browser.
🎬 brain-gif-generator Streamlit + MNE-Python app that turns source estimates (.stc) into animated brain GIFs.
🗿 headmodel_individualization Fork of PCAwarp: MRI-free head models from a photogrammetry scan with quality check.
😬 FacialGestures MEG facial-gesture task (built with Goxpyriment) for removing speech muscle artefacts automatically.
🎮 Brain Quest Educational game: guess which brain area is active.

🎓 Background

M.Sc. Integrative Biology & Physiology · B.Sc. Biology, Sorbonne Université

📲 Let’s connect!

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  1. NeurExp_Tracker NeurExp_Tracker Public

    A web application for tracking neuroimaging study acquisitions.

    TypeScript

  2. brain-gif-generator brain-gif-generator Public

    A simple and fast Streamlit app using MNE-Python to create customizable animated GIFs from brain source estimates (.stc files).

    Python

  3. fMRI_quickstart fMRI_quickstart Public

    Template for scalable fMRI workflows: BIDS, DeepPrep, and first-level general linear model (GLM) analysis.

    Jupyter Notebook

  4. meg-pipeline meg-pipeline Public

    Comprehensive MEG pipeline from raw data to source reconstruction.

    Python 2

  5. GuessWho-Game GuessWho-Game Public

    This game was designed to allow the data collection of a hyperscanning experiment via videoconference between two children.

    Python