Skip to content
@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

Pinned Loading

  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 4 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python 1

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 13 3

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 5

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 7

Repositories

Showing 10 of 199 repositories
  • gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    hubmapconsortium/gateway's past year of commit activity
    Python 0 MIT 1 9 1 Updated Nov 10, 2026
  • ingest-api Public

    HuBMAP Data Ingest API

    hubmapconsortium/ingest-api's past year of commit activity
    Python 0 MIT 0 12 3 Updated Nov 10, 2026
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui's past year of commit activity
    TypeScript 10 MIT 5 140 11 Updated Nov 10, 2026
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui's past year of commit activity
    TypeScript 13 MIT 3 173 5 Updated Nov 10, 2026
  • data-containers Public

    Code for building and manipulating data containers like RO-Crate, Croissant, etc.

    hubmapconsortium/data-containers's past year of commit activity
    Python 0 MIT 0 0 1 Updated Nov 10, 2026
  • ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    hubmapconsortium/ingest-pipeline's past year of commit activity
    Python 4 MIT 7 79 7 Updated Nov 9, 2026
  • dataset-metadata-spreadsheet Public

    This repository stores all the next-generation dataset metadata specification produced by the Data Coordination Working Group (DCWG). Every distinct folder corresponds to a particular assay or tissue sample used to produce the dataset.

    hubmapconsortium/dataset-metadata-spreadsheet's past year of commit activity
    1 MIT 0 0 0 Updated Nov 9, 2026
  • ccf-validation-tools Public

    HRA ASCT+B Validation Reports

    hubmapconsortium/ccf-validation-tools's past year of commit activity
    Python 6 Apache-2.0 1 5 4 Updated Nov 9, 2026
  • ingest-ui Public

    HuBMAP Data Ingest Portal

    hubmapconsortium/ingest-ui's past year of commit activity
    JavaScript 5 MIT 0 3 2 Updated Nov 5, 2026
  • user-templates-api Public
    hubmapconsortium/user-templates-api's past year of commit activity
    Jupyter Notebook 0 MIT 6 4 2 Updated Nov 4, 2026
View all repositories