The example run in the Wiki does not appear to have the right syntax.
To test FragGeneScanPlus with a complete genomic sequence,
./FGS+ -genome=./example/NC_000913.fna -out=./example/NC_000913.test -complete=1 -train=complete
If I'm not mistaken, these are not the right command line options for the FGS+ executable (they would work on the Perl script that comes with FragGeneScan).
The example run in the Wiki does not appear to have the right syntax.
If I'm not mistaken, these are not the right command line options for the FGS+ executable (they would work on the Perl script that comes with FragGeneScan).