This repository contains the data, Jupyter Notebooks and setup for a workshop on the toolbox refineGEMs and the
workflow collection SPECIMEN.
- Code (Python scripts, Jupyter notebooks, shell pipelines) is released under the MIT License.
See the
LICENSEfile. - Tutorial text, figures, slides, and other non‑code material are released under
Creative Commons Attribution 4.0 International (CC‑BY‑4.0).
See
LICENSE-CC-BY.txt. - This tutorial uses data from UniProt (see folder
./data/Uniprot) (The UniProt Consortium, licensed under CC-BY 4.0). - This tutorial also uses data from the National Center for Biotechnology Information (NCBI), which is in the public
domain (see folder
./data/and./data/template/).
This tutorial uses models from the BioModels Database
(see folder ./data/template).
Models are released under the Creative Commons Attribution 4.0 International (CC-BY-4.0) license.
Please cite the original model authors as indicated on the BioModels entry pages.
Feel free to reuse, remix, and redistribute as long as you give appropriate credit.