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@chupverse

Poitiers Health Data

A collection of R packages and other codes from Poitiers Univeristy Hospital

The University Hospital of Poitiers (CHUP) is a public health establishment in the Vienne department in France. In conjunction with the Poitiers University, the CHUP combines care, research and innovation. The chupverse reposetory includes R packages for data analyses. We also share examples for estimations of sample size, presentations of speakers in the data science seminars, and $(La)TeX$ templates.

packages

  • gcomputation proposes the estimation of marginal effects using G-computation for several outcomes.
  • survivalPLANN allows the estimation of a survival neural network and the related predcitions from new datasets.
  • survivalSL allows the construction of a super learner in the presence of censored times-to-event.
  • survivalNET is relative to flexible model the net survival, i.e. the survival when the only cause of death is due to the disease.

Estimation of sample sizes

  • The repository sample-size is devoted to the calculation of the number of patients required for several studies such as an randomized clinical trial (RCT) for causal inference or a cohort for constructing or validating predictive tools.
  • Click here to access to the related R-shiny website for an user-friendly interface.

Presentations performed during the data science seminars

$(La)TeX$ templates

Pinned Loading

  1. survivalNET survivalNET Public

    R Package for modeling flexible net survival

    R 3 2

  2. survivalPLANN survivalPLANN Public

    R Package for implementing partial logistic artificial neural networks (PLANN) with time-to-event

    R 2 2

  3. sample-size sample-size Public

    Several R codes to calulate the number of patients required in clinical trials

    R 7 5

  4. gcomputation gcomputation Public

    An R package for causal inference by using G-computation

    R 7 3

Repositories

Showing 10 of 16 repositories
  • gcomputation Public

    An R package for causal inference by using G-computation

    chupverse/gcomputation's past year of commit activity
    R 7 3 0 0 Updated Sep 8, 2026
  • survivalSL Public

    R Package for Predicting Survival by using a Super Learner

    chupverse/survivalSL's past year of commit activity
    R 12 4 0 0 Updated Jul 29, 2026
  • .github Public
    chupverse/.github's past year of commit activity
    0 0 0 0 Updated Jun 24, 2026
  • descriptive-tools Public

    Several functions for descriptive analyses (tables, figures, etc.)

    chupverse/descriptive-tools's past year of commit activity
    R 0 1 0 0 Updated Jun 19, 2026
  • survivalPLANN Public

    R Package for implementing partial logistic artificial neural networks (PLANN) with time-to-event

    chupverse/survivalPLANN's past year of commit activity
    R 2 2 0 1 Updated May 28, 2026
  • sample-size Public

    Several R codes to calulate the number of patients required in clinical trials

    chupverse/sample-size's past year of commit activity
    R 7 GPL-3.0 5 0 0 Updated Mar 16, 2026
  • causal-workshop Public

    The slides, documents and data for the practical phase of the Inserm's causal workshop

    chupverse/causal-workshop's past year of commit activity
    R 2 1 0 0 Updated Oct 15, 2025
  • slides-of-seminars Public

    This repository contains the slides of the talk performed during our seminars

    chupverse/slides-of-seminars's past year of commit activity
    1 2 0 1 Updated Oct 1, 2025
  • survivalNET Public

    R Package for modeling flexible net survival

    chupverse/survivalNET's past year of commit activity
    R 3 2 0 0 Updated Sep 19, 2025
  • KP-L3 Public Forked from Pelras-A/KP-L3

    Predicting progression-free survival after third-line therapy in pancreas cancer

    chupverse/KP-L3's past year of commit activity
    R 0 Unlicense 3 0 0 Updated Aug 4, 2025

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