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@bioepic-data

BioEPIC

Biological & Environmental Program Integration Center
README.md

Welcome to BioEPIC

The Biological & Environmental Program Integration Center (BioEPIC) will bring together experimental systems like EcoPODs, and modeling frameworks like EcoSIM, adjacent to key informatics and data resources like NMDC, JGI, KBase, and ESS-DIVE. BioEPIC will leverage and go beyond these resources, using innovative AI methods to assist in the extraction and integration of data and simulations.

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  1. bervo bervo Public

    BERVO, the Biological and Environmental Research Variable Ontology

    HTML 7 3

Repositories

Showing 10 of 14 repositories
  • ecosim-agent Public
    bioepic-data/ecosim-agent's past year of commit activity
    HTML 3 0 1 0 Updated Oct 31, 2026
  • bervo Public

    BERVO, the Biological and Environmental Research Variable Ontology

    bioepic-data/bervo's past year of commit activity
    HTML 7 3 64 (14 issues need help) 0 Updated Oct 30, 2026
  • site-kb Public

    Environmental site knowledge base with curated variable catalogs and a static browser

    bioepic-data/site-kb's past year of commit activity
    Python 1 MIT 0 0 1 Updated Oct 26, 2026
  • data-harmonization-eval Public

    This repository stores a formal evaluation framework for an LLM agent workflow

    bioepic-data/data-harmonization-eval's past year of commit activity
    Python 1 0 4 0 Updated Oct 15, 2026
  • trowel Public

    TROWEL - a Tool for Retrieving, Organizing, and Wrangling Earth science data and Labels

    bioepic-data/trowel's past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 1 4 0 Updated Oct 15, 2026
  • benchmark-datasets Public

    A repository for creating AI-ready benchmark datasets from environmental and ecological data sources, with a focus on harmonizing heterogeneous datasets for machine learning and model benchmarking applications.

    bioepic-data/benchmark-datasets's past year of commit activity
    Python 2 0 0 0 Updated Oct 15, 2026
  • ecosim-co-scientist Public

    A prototype AI-powered research assistant for preparing EcoSIM analyses, generating netCDF files from multiple sources

    bioepic-data/ecosim-co-scientist's past year of commit activity
    Python 1 4 6 0 Updated Jun 4, 2026
  • chess-data-jmc Public
    bioepic-data/chess-data-jmc's past year of commit activity
    HTML 0 0 0 0 Updated May 12, 2026
  • fao-soils Public

    Rendering of FAO soil database

    bioepic-data/fao-soils's past year of commit activity
    Python 2 BSD-3-Clause 0 1 5 Updated Mar 20, 2026
  • chess-data Public

    Download and process CHESS (Catchment Hydrology and Environmental Science Suite) data from ESS-DIVE, mapped to BERVO ontology

    bioepic-data/chess-data's past year of commit activity
    Python 0 0 0 0 Updated Mar 20, 2026
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