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Wrap GenBank qualifiers at spaces and escape quotation marks in them build-and-test #85: Commit d97757d pushed by jeffreybarrick
25m 23s master
master
25m 23s
Pass gdtools ANNOTATE's annotation options through to each mutation build-and-test #84: Commit ff4d10a pushed by jeffreybarrick
30m 26s master
master
30m 26s
Rebuild the seven long-test goldens build-and-test #83: Commit bf76492 pushed by jeffreybarrick
23m 7s master
master
23m 7s
Add breseq --apply-check, which reports original reference coordinates build-and-test #82: Commit 25617bb pushed by jeffreybarrick
25m 15s master
master
25m 15s
Report every called haplotype of a linked run as its own mutation build-and-test #81: Commit 23039a3 pushed by jeffreybarrick
28m 16s master
master
28m 16s
Predict gene conversions in the pipeline from the reads that map to b… build-and-test #80: Commit 085021a pushed by jeffreybarrick
26m 56s master
master
26m 56s
Make --long-read-pair-distance default to 2000 (0 turns it off) build-and-test #79: Commit f30111c pushed by jeffreybarrick
22m 34s master
master
22m 34s
Rebuild the p6 long golden for the two-SNP codon translation fix build-and-test #78: Commit 9959a95 pushed by jeffreybarrick
22m 19s master
master
22m 19s
Scale a contig's CN coverage by its reference group's single-copy level build-and-test #77: Commit e10dfa2 pushed by jeffreybarrick
19m 14s master
master
19m 14s
Print the CNery version in the executable check build-and-test #76: Commit 354e18b pushed by jeffreybarrick
26m 22s master
master
26m 22s
Read an empty cell in CNery's CNV.csv as a missing one, not a fatality build-and-test #75: Commit 67b6320 pushed by jeffreybarrick
21m 39s master
master
21m 39s
Tell CNery which contigs are one reference, in one argument build-and-test #74: Commit e1bbc07 pushed by jeffreybarrick
20m 51s master
master
20m 51s
Add optional hard limits on divergence from the reference build-and-test #73: Commit f7100f9 pushed by jeffreybarrick
20m 44s master
master
20m 44s
Call copy number on a continuous grid in polymorphism mode build-and-test #72: Commit 9aab25c pushed by jeffreybarrick
18m 39s master
master
18m 39s
Merge branch 'master' into worktree-CN-plots build-and-test #71: Commit ab1f451 pushed by jeffreybarrick
17m 0s master
master
17m 0s
Drop the deprecated predict flags from the long tests build-and-test #70: Commit 23736ad pushed by jeffreybarrick
22m 44s master
master
22m 44s
Merge branch 'worktree-output-tables' build-and-test #69: Commit 1a30aed pushed by jeffreybarrick
14m 24s master
master
14m 24s
Make a failing CI run say which test failed and why build-and-test #68: Commit 788b9fb pushed by jeffreybarrick
14m 13s master
master
14m 13s
Predict an IS-mediated deletion whose missing coverage stops short of… build-and-test #67: Commit c033e63 pushed by jeffreybarrick
15m 36s master
master
15m 36s
Check CNery's segment coordinates where they become breseq's build-and-test #66: Commit 0e28880 pushed by jeffreybarrick
12m 45s master
master
12m 45s
Stop leaving the two pair-null tab files in data/ build-and-test #65: Commit 161cb0f pushed by jeffreybarrick
11m 41s master
master
11m 41s
Merge branch 'master' into worktree-SC-false-positives build-and-test #64: Commit a6dda24 pushed by jeffreybarrick
12m 21s master
master
12m 21s
Merge pull request #424 from barricklab/worktree-SC-false-positives build-and-test #63: Commit be213bd pushed by jeffreybarrick
12m 49s master
master
12m 49s
Reject soft clipping that comes from only one read strand build-and-test #62: Pull request #424 opened by jeffreybarrick
11m 37s worktree-SC-false-positives
worktree-SC-false-positives
11m 37s
Merge branch 'master' of https://github.com/barricklab/breseq build-and-test #61: Commit 6814533 pushed by jeffreybarrick
13m 11s master
master
13m 11s