fix: disable species context qualifier output

[SkyeAv]

Prevents species_context_qualifier from being inferred from resolved node taxon metadata and leaking into supporting-study text or final edge output. Node taxon metadata remains available on resolved nodes.

Disabled Field Policy

• Stable policy: Adds DISABLED_EDGE_FIELDS in src/tablassert/biolink.py and excludes disabled fields from ALLOWED_EDGE_FIELDS.
• Pipeline filtering: Removes derivation and filters the field in src/tablassert/lib.py before class pruning, study serialization, or supporting-text folding.
• Configuration validation: Rejects the field through both qualifier and annotation entry points with field-disabled.

Documentation

• Updates docs/configuration/table.md, src/tablassert/agent.py, and CHANGELOG.md.
• Adds regression coverage for configuration rejection and generated output.

Fixes

• Incorrect inference: The previous behavior used default resolved taxon metadata to synthesize an edge qualifier. Unsupported edge handling then relocated it into supporting-study descriptions.
• Accepted caveat: Existing configurations that author this field now fail validation intentionally. Existing generated artifacts must be regenerated.

Testing

• uv run pytest -q → 896 passed, 35 skipped
• uv run ruff check . → all checks passed
• uv run ruff format --check . → 74 files already formatted
• uv run pyright → 0 errors, 0 warnings, 0 informations
• cargo fmt --check --manifest-path rust/Cargo.toml → passed
• cargo test --manifest-path rust/Cargo.toml → 69 unit tests and 10 integration tests passed; 1 ignored
• cargo clippy --manifest-path rust/Cargo.toml --all-targets -- -D warnings → passed

[coderabbitai]

Important

Review available on request

• 🔍 Trigger review

Reviews should be triggered manually for repositories with fewer than 10 stars. Select Trigger review above or comment @coderabbitai review to review the latest changes. For a full review, comment @coderabbitai full review.

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro Plus

Run ID: b4966462-694d-4d32-8abd-390c7bad1c99

---

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

_{Comment @coderabbitai help to get the list of available commands.}