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1. macrosyntR macrosyntR Public

   R package for comparison of synteny conservation at the genome-wide scale.

   R 16

2. Aiptasia-db Aiptasia-db Public

   A Shiny web application to explore the sequencing resources available for the sea anemone Aiptasia (Exaiptasia diaphana), the model organism to study coral-dinoflagellate endosymbiosis.

   R

3. rbhXpress rbhXpress Public

   A shell script that uses diamond to compute the reciprocal best hits between two proteomes in a rush.

   Shell 5

4. Aiptasia_sc_atlas_2026 Aiptasia_sc_atlas_2026 Public

   Scripts used to process and analyze the single cell atlases of Aposymbiotic and Symbiotic Aiptasia polyps

5. CL-CHEN-Lab/RepliSeq CL-CHEN-Lab/RepliSeq Public

   R package for the analysis of Repli-Seq data to study DNA replication timing program: From count matrices, data normalization to replication timing calculation.

   R 9 2

6. CL-CHEN-Lab/CFS-Seq CL-CHEN-Lab/CFS-Seq Public

   Analysis of Repli-Seq data under replication stress to map common fragile sites (CFSs) : From count matrices to SDR (significantly delayed region) identification.

   R 2 2