Structural and Functional Genomics Laboratory
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ConsensuSV-pipeline
ConsensuSV-pipeline PublicAutomatised pipeline of ConsensuSV workflow.
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Repositories
- pyLoopSage Public
Simulate cohesin loop extrusion with Monte Carlo, build 3D chromatin structures with OpenMM, and compare them with your loop data.
- RepliSage Public
A software that simulates the dynamics of DNA replication by following a sofisticated Hamiltonian Monte Carlo approach.
- 3dgnome-ng Public
Highly experimental playground version of 3D-GNOME derived from original paper and source code
- TheChromatinGame Public
An experimental interactive python game about the chromatin folding. Feel free to play!
- enhancer3D Public
A database of 3D chromatin model ensembles and enhancer-promoter distance profiles for archaic (Neanderthal, Denisovan) and modern human genomes (GM12878, H1-ESC, HFFc6)
- intrinsic_linking_analysis Public
Analysis for the "Intrinsic linking of chromatin fiber in human cells" manuscript.
- tbooo Public
The Biobank Of Our Own - scripts that recreate access patterns of UK Biobank using data from 1000 Genomes and Simons Genome Diversity Project
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