Add LI-COR Odyssey Classic + DeviceCard for instrument provenance - #1025

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vcjdeboer wants to merge 73 commits into

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vcjdeboer:odyssey-v1b1

Commits on Mar 23, 2026

Commits on Mar 25, 2026

add P-DW-10ML-24-C part number
rickwierenga
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4beca0d
Add BackendParams base class with autoreload-safe isinstance

rickwierenga
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67ec8b4

Commits on Mar 26, 2026

Commits on Mar 27, 2026

Fix lint, format, and mypy errors for CI compliance

rickwierenga
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f2a241e
Add v1b1 branch to CI workflow triggers

rickwierenga
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0c91c9d
Add pumping capability and migrate vendor backends (#958)

rickwierenga
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e25431a
Refactor BioShake models from subclasses to factory functions

rickwierenga
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ab4af3d
Add liquid handling capabilities (#969)

rickwierenga
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8afc75d
Add arms module with Arm/GripperArm hierarchy, Brooks and iSWAP backends (#957)

rickwierenga
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ed710c6
productive work
rickwierenga
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e061346

Commits on Mar 28, 2026

Add STARAutoload class for Hamilton STAR autoload module control

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1117f2c
Migrate legacy PlateReader to use capabilities

rickwierenga
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619c7d5

Commits on Mar 29, 2026

Extract STAR subsystems and generic driver methods from legacy backend

rickwierenga
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be81047
Rename get_ to request_ for all device-reading methods across codebase

rickwierenga
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d364172
Add multi-channel PIP methods, foil piercing, and review fixes

rickwierenga
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fe3e577

Commits on Mar 30, 2026

RFC 7386 JSON Merge Patch serialization with compact format (#885)

rickwierenga
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6758349

Commits on Mar 31, 2026

Add PlateWashingCapability for manifold-based plate washers (#980)

rickwierenga
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6f7f7b5
Add bulk dispenser module with Multidrop Combi backend support (#964)

Robert-Keyser-Calico
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31998a7

Commits on Apr 1, 2026

Add SyringeDispensing and PeristalticDispensing capabilities

rickwierenga
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31933a6
Migrate EL406 to Device/Driver/CapabilityBackend architecture

rickwierenga
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97dccdd
WIP: Migrate Multidrop Combi to Device/Driver/CapabilityBackend architecture

rickwierenga
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3854785
Migrate EL406 and BioShake docs to manufacturer-based layout

rickwierenga
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797451e
Migrate EL406, BioShake, and 10 more devices to manufacturer-based docs

rickwierenga
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27fdbd7
Migrate analytical device docs to manufacturer-based layout

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fe39ca8
Migrate all material-handling devices to manufacturer-based docs

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d307355
Refine Multidrop Combi dispense workflow and document DispensingOrder

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6574e39
Add PIPChannel class, extract STAR errors/parsing, legacy delegates to STARDriver

rickwierenga
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fe3acd9
Migrate Hamilton STAR docs to manufacturer-based layout with new API

rickwierenga
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5563420

Commits on Apr 2, 2026

Merge branch 'main' into v1b1
rickwierenga
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b1ed92c
Fix CI, type safety, and safety-critical issues across v1b1

rickwierenga
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819d0e3
Safety, correctness, and architecture improvements across v1b1

rickwierenga
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588abbb

Commits on Apr 4, 2026

Port probe methods to PIPChannel, add firmware lock, fix notebooks and setup

rickwierenga
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705bdd6
Add scientific traceability logging across all non-legacy backends and drivers

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fedaea6
Add backend_params support to all setup methods

rickwierenga
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bd7a25b
Move single-channel queries to PIPChannel, fix move_y spacing safety

rickwierenga
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70d55e1
Refactor shaker capability: duration required, HasContinuousShaking mixin

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c18e9c4
Add plate tracking to bulk dispensing capabilities

rickwierenga
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eff943d
EL406: plate caching on driver, parameterless batch, ShakeParams

rickwierenga
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9a796e4

Commits on Apr 6, 2026

Fix lint, type, and correctness issues across v1b1

rickwierenga
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cd67533
Fix Liconic test model: use STX44_DC2 for humidity tests

rickwierenga
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cd628e2

Commits on Apr 8, 2026

WIP: pickup_distance_from_bottom, arm delegation, STAR/STARLet classes, docs

rickwierenga
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d96e516

Commits on Apr 9, 2026

WIP: Rename dispensing/washing classes, inline forwarding methods, BackendParams

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5c20b33
WIP: LoadingTray capability, Cytation integration, docs

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9d06b8d
Fix iSWAP close_gripper, improve iswap.ipynb docs

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8639d64
EL406: fix multi-volume batch lifecycle, add advanced usage docs

rickwierenga
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1bd8941
Add HasLoadingTray mixin, SpectraMax LoadingTray, direct send_command in backends

rickwierenga
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ef1764f

Commits on Apr 10, 2026

Remove aravis files (moved to separate PR #985)

rickwierenga
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a4162e5

Commits on Apr 11, 2026

Use Aravis camera driver instead of PySpin for Cytation (#985)

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af69da8

Commits on Apr 13, 2026

basic implementation of uFactory xArm (#965)

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72ef784

Commits on Apr 15, 2026

SCILA: expose drawers as LoadingTray capabilities

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c5e31a4

Commits on Apr 16, 2026

xArm6: rename joint enum values to J1-J6

rickwierenga
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65c9ba4

Commits on Apr 17, 2026

Migrate Tecan Infinite 200 PRO to Device/Driver/Capability architecture (#989)

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97aa2f9

Commits on Apr 18, 2026

Port Hamilton Nimbus to v1b1 architecture (#986)

rickwierenga
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aacf8b7
Require deck at driver/backend/capability construction for STAR and Nimbus

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d3c6d0a

Commits on Apr 21, 2026

pf kinematics
rickwierenga
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0fa5e4e

Commits on Apr 23, 2026

Expose gripper_length and gripper_z_offset on PreciseFlex400 Device

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162dd2c

Commits on Apr 25, 2026

Add Pioreactor (#893)

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2af885b

Commits on Apr 27, 2026

STARPIPChannel.request_x_pos: delegate to left_x_arm (C0 RX), was sending invalid C0 RA pn= (#1012)
BioCam
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dfacc60

Commits on Apr 28, 2026

Return STAR firmware versions as datetime.date instead of strings

rickwierenga
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28d8540

Commits on May 3, 2026

Add LI-COR Odyssey Classic to v1b1 architecture

vcjdeboer
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0909bfb
Add DeviceCard for instrument identity / provenance metadata

vcjdeboer
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f66983d
Refactor Odyssey driver to transport-only (P-06)

vcjdeboer
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9d5319d
Tests + cross-capability orchestration cleanup

vcjdeboer
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034d87a
Pre-PR readiness: lint, format, mypy, changelog, optional dep

vcjdeboer
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7b46a17

Commits on Sep 7, 2026

Remove inherited architecture changes and keep Odyssey files
rickwierenga
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c8885f8

Commits on Sep 8, 2026

Port Odyssey Classic to direct device API and shared HTTP transport
rickwierenga
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8bb87af