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@Noble-Lab

Noble Lab Department of Genome Sciences UW

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  1. casanovo casanovo Public

    De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

    Python 205 87

  2. HiCFoundation HiCFoundation Public

    HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.

    Python 52 6

  3. cascadia cascadia Public

    Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data

    Python 39 16

  4. FDRBench FDRBench Public

    Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment

    Java 37 3

  5. Carafe Carafe Public

    High quality in silico spectral library generation for data-independent acquisition proteomics

    Java 26 5

  6. crema crema Public

    Confidence Estimation for Mass Spectrometry Proteomics

    Python 17 2

Repositories

Showing 10 of 57 repositories
  • Sceptic Public

    Pseudotime analysis for time-series single-cell sequencing and imaging data

    Noble-Lab/Sceptic's past year of commit activity
    Jupyter Notebook 14 MIT 2 0 0 Updated Oct 29, 2026
  • MAYA Public
    0 0 0 0 Updated Oct 27, 2026
  • casanovo Public

    De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

    Noble-Lab/casanovo's past year of commit activity
    Python 205 Apache-2.0 87 24 (4 issues need help) 16 Updated Oct 24, 2026
  • Carafe Public

    High quality in silico spectral library generation for data-independent acquisition proteomics

    Noble-Lab/Carafe's past year of commit activity
    Java 26 Apache-2.0 5 4 1 Updated Oct 24, 2026
  • CasanovoGUI Public

    CasanovoGUI: a cross-platform desktop application for Casanovo

    Noble-Lab/CasanovoGUI's past year of commit activity
    Java 9 GPL-3.0 2 0 0 Updated Oct 20, 2026
  • casanovoutils Public
    Noble-Lab/casanovoutils's past year of commit activity
    Python 2 2 3 2 Updated Oct 20, 2026
  • Puget Public

    Deep learning model for predicting gene expression across cell types using sequence and 3D chromatin organization data

    Noble-Lab/Puget's past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Oct 5, 2026
  • crema Public

    Confidence Estimation for Mass Spectrometry Proteomics

    Noble-Lab/crema's past year of commit activity
    Python 17 2 3 5 Updated Sep 17, 2026
  • snATAC_aging_clocks Public

    A suite of snATAC-seq clocks for predicting and analyzing aging across brain regions, species, tissues, diseases, and rejuvenation.

    Noble-Lab/snATAC_aging_clocks's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Sep 8, 2026
  • glissade Public

    FDR control for mass spectrometry analysis using de novo and database search results

    Noble-Lab/glissade's past year of commit activity
    Python 2 1 1 1 Updated Sep 3, 2026

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