📘 View the full tutorial here:
👉 Open Website
This tutorial walks you through writing and automating image analysis using macros in ImageJ / FIJI.
Download the sample images
If you’ve found this resource useful, please consider sharing it with your colleagues, students, or lab mates. The more people who benefit from it, the better!
I’m always looking to improve this guide. If you:
- 🐛 Found a bug or error in the macro code
- ❓ Think a topic could be explained better
- 📚 Have a suggestion for a new section or feature
- 💡 Created your own macro and want to contribute it
...I would love to hear from you!
You can submit feedback or suggest changes by opening an issue on GitHub.
🛠️ Don't worry if you're not a GitHub pro — even just pointing out a typo is helpful!
Thank you for helping make this guide better for everyone!
If you have any questions, comments, or suggestions, please feel free to reach out to me:
The FIJI-macro-tutorial is housed here
The repository for this project is available here
FIJI Macro Tutorial by Marnie Maddock is licensed under Creative Commons Attribution 4.0 International (CC BY 4.0).
