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GH Issue 1756: Tolerate orphaned provisioned storage in nightly maintenance tasks - #8266
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…etrics task Scan only tables and columns the catalog confirms exist, so orphaned domain metadata no longer logs ERRORs nightly. Also migrate the task off deprecated SQLFragment methods.
…ener Domains can outlive the module that provisioned them, which made the nightly missing files check fail.
XingY
approved these changes
Nov 1, 2026
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Rationale
Stop nightly system maintenance tasks from failing or logging ERRORs when domain metadata outlives its provisioned storage. The special character metrics task fails with SQLState 42P01 on every run for tables whose physical table or column is gone (specimen, study dataset, assay result, ELISpot, NAb, sample type), triggering nightly alerts across many hosts. The missing files check aborts entirely when a domain's provisioned schema belongs to a module that's no longer deployed. Cleaning up the orphans themselves is tracked separately in GH Issue 1612.
Fixes GH Issue 1756.
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