uoa11-figshare-cache #56
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| name: uoa11-figshare-cache | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| use_author_cache: | |
| description: 'Use cached author data (instead of refreshing)' | |
| required: false | |
| default: 'false' | |
| type: choice | |
| options: | |
| - 'true' | |
| - 'false' | |
| schedule: | |
| - cron: "30 0 * * 0" | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| concurrency: | |
| group: uoa11-figshare-processing-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| update-cache: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 1 | |
| - name: Use Cache in folder ./output | |
| id: cache-restore-output | |
| uses: actions/cache/restore@v5 | |
| with: | |
| path: ./output | |
| key: uoa11-cache-files-${{ github.run_id }} | |
| restore-keys: | | |
| uoa11-cache-files- | |
| - name: Create output directory if it doesn't exist | |
| run: | | |
| mkdir -p output | |
| find ./output | |
| - run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: | | |
| git config --global user.name 'L-CAS GitHub' | |
| git config --global user.email 'marc@hanheide.net' | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies | |
| run: | | |
| set -e | |
| python -m pip install --upgrade pip | |
| pip install -r requirements-frozen.txt | |
| - name: Run figshare fetch (Step 1 - Retrieve articles and create CSV) | |
| env: | |
| FIGSHARE_TOKEN: ${{ secrets.FIGSHARE_TOKEN }} | |
| run: | | |
| set -e | |
| cd ./output | |
| if [ "${{ github.event_name }}" = "workflow_dispatch" ] && [ "${{ github.event.inputs.use_author_cache }}" = "true" ]; then | |
| echo "Running figshare_fetch.py with --use-author-cache (manually triggered)" | |
| python ../figshare_fetch.py -c ../uoa11-authors.yaml --use-author-cache --max-retries 30 --rate-limit-delay 0.1 -o uoa11-figshare_articles.csv -O uoa11-figshare_articles_all.csv | |
| else | |
| echo "Running figshare_fetch.py without cache (default behavior)" | |
| python ../figshare_fetch.py -c ../uoa11-authors.yaml --rate-limit-delay 0.1 --max-retries 30 -o uoa11-figshare_articles.csv -O uoa11-figshare_articles_all.csv | |
| fi | |
| - name: Run figshare bibtex (Step 2 - Generate bibtex from CSV) | |
| run: | | |
| set -e | |
| cd ./output | |
| echo "Running figshare_bibtex.py to generate bibtex from CSV" | |
| python ../figshare_bibtex.py -i uoa11-figshare_articles.csv -o uoa11.bib | |
| - name: Save Cache from folder ./output | |
| if: always() | |
| uses: actions/cache/save@v5 | |
| with: | |
| path: ./output | |
| key: ${{ steps.cache-restore-output.outputs.cache-primary-key || 'uoa11-cache-files' }} | |
| - name: Generate publication statistics | |
| run: | | |
| cd ./output | |
| python ../generate_stats.py --all-csv uoa11-figshare_articles_all.csv --dedup-csv uoa11-figshare_articles.csv >> $GITHUB_STEP_SUMMARY | |
| - name: Publish outputs to Nexus via HTTP PUT | |
| if: ${{ github.event_name != 'pull_request' }} | |
| env: | |
| NEXUS_USER: ${{ secrets.LCAS_REGISTRY_PUSHER }} | |
| NEXUS_PASS: ${{ secrets.LCAS_REGISTRY_TOKEN }} | |
| NEXUS_BASE_URL: https://lcas.lincoln.ac.uk/repository/repository/misc/bibtex/ | |
| run: | | |
| set -euo pipefail | |
| for file in uoa11.bib uoa11-figshare_articles.csv uoa11-figshare_articles_all.csv; do | |
| local_path="./output/${file}" | |
| target_url="${NEXUS_BASE_URL}/${file}" | |
| if [ ! -f "$local_path" ]; then | |
| echo "Expected file not found: $local_path" | |
| exit 1 | |
| fi | |
| echo "Uploading ${local_path} -> ${target_url}" | |
| curl --fail --show-error --silent \ | |
| -u "${NEXUS_USER}:${NEXUS_PASS}" \ | |
| --upload-file "$local_path" \ | |
| "$target_url" | |
| done | |
| - name: Upload artifacts | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: outputs | |
| path: | | |
| ./output/*.csv | |
| ./output/*.bib | |
| retention-days: 30 |