Pangenome stalling fixes (pseudogene removal) - #35

Merged

epbrenner merged 13 commits into

mainfrom

file_structure_checks

Aug 11, 2026

Commits on Jul 28, 2026

Adding data exporter functionality
epbrenner
committed
564bd27
Adding example data for export testing
epbrenner
committed
7cd8f95

Commits on Jul 29, 2026

Updated variable/function names
epbrenner
committed
5a944a9
Update data_curation.R
jananiravi
committed
b2072ca

Commits on Jul 30, 2026

fix refind=off in panaroo; other minor edits

jananiravi
and
epbrenner
committed
b0bbbe4

Commits on Jul 31, 2026

Update data_processing.R

jananiravi
and
epbrenner
committed
d15cc73

Commits on Aug 1, 2026

Create output dirs before .docker_path
jananiravi
committed
b1f1ec3

Commits on Aug 4, 2026

Minor pseudogene filtering updates

epbrenner
and
jananiravi
committed
6c3ce32
Merge branch 'main' into file_structure_checks
epbrenner
authored
fa2f5b2
minor changes
jananiravi
committed
091cdcb
ran devtools::document
jananiravi
committed
b98a99f

Commits on Aug 5, 2026

update panaroo to 1.7.0
AbhirupaGhosh
committed
8ca744d

Commits on Aug 10, 2026

Updates from code review
epbrenner
committed
f964a2e