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Update 1.0.0 (massive rewrite) - #106

Merged

HyperCodec merged 134 commits into

mainfrom

dev

Feb 23, 2026

Commits on Apr 16, 2024
- rename CONTRIBUTING
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  committed
  273b9fa
- add flush_state to readme example
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  3f50d08
- Merge pull request #47 from inflectrix/docfixes
  HyperCodec
  authored
  e6d1215
- create basic log test
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  committed
  a94198a
- create plotters example
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  339b90b
- small changes
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  5cddae7
- more configuration
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  728cbde
Commits on Apr 17, 2024
- make plotting ng more generic
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  91c3f9f
Commits on Apr 18, 2024
- fix test rayon feature
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  f6d0df0
- cargo fmt
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  cc88ebf
- Merge pull request #49 from inflectrix/41-write-more-tests
  HyperCodec
  authored
  66391cc
- create custom activations example
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  b95084d
- fix opposite high and low
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  3586879
Commits on May 6, 2024
- Update Cargo.toml
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  authored
  27e972a
Commits on May 15, 2024
- use svgbackend (now it hangs for some reason)
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  4b8cef0
- fix arc::into_inner failure
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  committed
  6a7090a
- fix data retrieval
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  committed
  945ea4a
- make compatible with other features
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  0717843
- cargo fmt
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  committed
  6a98fb0
- Merge pull request #50 from HyperCodec/plotters-example
  HyperCodec
  authored
  ca58022
- Merge pull request #55 from HyperCodec/HyperCodec-patch-1
  HyperCodec
  authored
  d150af4
- create progress bar for plotting example
  HyperCodec
  committed
  44b7fdb
- create progress bar for basic example
  HyperCodec
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  6d17ec6
- cargo fmt
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  d3a9c40
- Merge pull request #57 from HyperCodec/examples-indicatif
  HyperCodec
  authored
  9c4daf4
Commits on Jun 1, 2024
- add logic to prevent duplicated input neurons
  HyperCodec
  committed
  e45908c
- Merge pull request #62 from HyperCodec/duped-inputs
  HyperCodec
  authored
  1ca896b
Commits on Jun 13, 2024
- cargo fmt
  HyperCodec
  committed
  7c31f30
- Merge pull request #54 from HyperCodec/activation-example
  HyperCodec
  authored
  707c3e0
- change activation function to one that doesn't return NaN
  HyperCodec
  committed
  a32bfff
- Merge pull request #66 from HyperCodec/activation-fixes
  HyperCodec
  authored
  53f21e9
Commits on Sep 24, 2024
- Update CONTRIBUTING.md
  HyperCodec
  authored
  627830a
- Merge pull request #77 from HyperCodec/HyperCodec-patch-1
  HyperCodec
  authored
  1295d3d
Commits on Feb 4, 2025
- Merge branch 'rewrite' into dev
  HyperCodec
  committed
  1978058
- delete topology and some examples
  HyperCodec
  committed
  31b6e7d
- solve clippy errors
  HyperCodec
  committed
  0a958f9
- Merge pull request #84 from HyperCodec/rewrite-temp
  HyperCodec
  authored
  1a8896b
Commits on Jan 14, 2026
- clear mutation and tests code for new rewrite
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  committed
  93481f2
Commits on Jan 15, 2026
- begin rewriting core mutation functions
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  committed
  551843e
- fix graph invariants check
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  committed
  1458729
- parallelize random testing
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  committed
  bbb4a71
Commits on Jan 21, 2026
- implement add_connection
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  committed
  301d927
- cargo fmt
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  8dbbfc0
Commits on Jan 29, 2026
- implement remove_connection
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  committed
  68e7654
Commits on Jan 31, 2026
- fix remove_connection, add bias mutation, and complete general mutation function
  HyperCodec
  committed
  7918a27
- implement activation mutation
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  f5b4d5f
Commits on Feb 6, 2026
- use genetic-rs context api for mutation settings
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  cd0f97e
- add missing unstaged changes
  HyperCodec
  committed
  03eb490
- implement basic crossover merge (unfinished)
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  committed
  7659e64
Commits on Feb 9, 2026
- finish crossover implementation (invariant fixing)
  HyperCodec
  committed
  a2efc87
- remove accidentally committed temp file
  HyperCodec
  committed
  f68c6b7
- update example todo messages
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  committed
  c0560b0
- publicize activation fn name field
  HyperCodec
  committed
  d8f8fe2
- add methods to specify activation registry during mutation
  HyperCodec
  committed
  01f804b
- refactor panicking get_neuron and get_neuron_mut to Index and IndexMut, then implement Option versions in their place.
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  committed
  d342218
Commits on Feb 10, 2026
- fix serde feature
  HyperCodec
  committed
  c3a6e25
Commits on Feb 11, 2026
- make basic example
  HyperCodec
  committed
  041599b
- small changes to basic example
  HyperCodec
  committed
  fb732a2
- mitigate the fuckass bug on release optimizations
  HyperCodec
  committed
  b442100
- add error calculation to basic example
  HyperCodec
  committed
  71b6007
- fix fmt and clippy warnings
  HyperCodec
  committed
  3d5256b
Commits on Feb 12, 2026
- implement extra genes example (vibe code + cleanup for readability and customizability)
  HyperCodec
  committed
  9c41d2c
- add serde example
  HyperCodec
  committed
  23a1196
- add some documentation to README
  HyperCodec
  committed
  a467b3f
- fix fmt and clippy warnings
  HyperCodec
  committed
  e4488e4
- ignore annoying doctest and make a shitty fitness function so the other one passes
  HyperCodec
  committed
  93fb1d1
- rework settings/context for qol and extra customizability
  HyperCodec
  committed
  998fa93
- cargo fmt
  HyperCodec
  committed
  d933e5d
- Merge pull request #104 from HyperCodec/rewrite2
  HyperCodec
  authored
  632bf9d
- bump neat version number for update
  HyperCodec
  committed
  35301fe
- prevent CI-CD from double checking
  HyperCodec
  committed
  85ea80d
Commits on Feb 19, 2026
- bump genetic-rs version
  HyperCodec
  committed
  d353c94
- fix build error on examples
  HyperCodec
  committed
  37fc20f
- cargo fmt
  HyperCodec
  committed
  501780c
- fix readme example
  HyperCodec
  committed
  0a5be7d
- invert cache is_ready logic
  
  HyperCodec
  and
  Copilot
  authored
  04458af
- small doc comment change
  
  HyperCodec
  and
  Copilot
  authored
  adc5272
- fix doc comment
  
  HyperCodec
  and
  Copilot
  authored
  d711d6e
- small README update
  HyperCodec
  committed
  8d96e4e
- Initial plan
  Copilot
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  947fa47
- Add tests for predict method (basic, consistency, parallel)
  
  Copilot
  and
  HyperCodec
  committed
  f7fd673
- small logic fix on is_ready (doesn't fix the major issue)
  HyperCodec
  committed
  c9d13fc
- Fix predict deadlock: check is_ready before claim in eval
  
  Copilot
  and
  HyperCodec
  committed
  6b8a1a4
- Document why claim is still necessary in eval (TOCTOU race)
  
  Copilot
  and
  HyperCodec
  committed
  865d284
- Merge pull request #107 from HyperCodec/copilot/sub-pr-106
  HyperCodec
  authored
  a1f7934
Commits on Feb 20, 2026
- remove potential panic in is_connection_safe logic
  HyperCodec
  committed
  dc43f1f
- Update CONTRIBUTING.md
  
  HyperCodec
  and
  Copilot
  authored
  d7edb9d
- Update CONTRIBUTING.md
  
  HyperCodec
  and
  Copilot
  authored
  3970aba
- rename neuronlocation unwrap method
  HyperCodec
  committed
  2799677
- update doc comment on remove_neuron usage
  HyperCodec
  committed
  2c31ebb
- fix corner case in add_connection_unchecked (doesn't affect default behavior)
  
  HyperCodec
  and
  Copilot
  authored
  db24c61
- Initial plan
  Copilot
  committed
  bb3e06b
- improve error message
  
  HyperCodec
  and
  Copilot
  authored
  d1a8f76
- update add_neuron doc comment
  HyperCodec
  committed
  6ca8642
- update doc comment on split_connection
  HyperCodec
  committed
  5eca2ae
- update predict doc comment
  
  HyperCodec
  and
  Copilot
  authored
  d9035ab
- Fix dfs cycle detection to allow valid DAGs with converging paths
  
  Copilot
  and
  HyperCodec
  committed
  bf678c4
- make downshifting remove invalid outputs automatically
  HyperCodec
  committed
  7edcd45
- pass the option to mutate_weight output instead of unwrapping
  HyperCodec
  committed
  805d075
- cargo fmt
  HyperCodec
  committed
  818d603
- Fix test to demonstrate actual diamond-topology DFS bug
  
  Copilot
  and
  HyperCodec
  committed
  b0dc104
- cargo fmt
  HyperCodec
  committed
  225b11b
- Merge pull request #108 from HyperCodec/copilot/sub-pr-106
  HyperCodec
  authored
  a067e7f
- fix some old function signatures
  HyperCodec
  committed
  555c61c
- add an additional error message for random_location_in_scope
  HyperCodec
  committed
  d2658b7
- Initial plan
  Copilot
  committed
  dfc9ba8
- Simplify and fix random_activation_in_scope in ActivationRegistry
  
  Copilot
  and
  HyperCodec
  committed
  bb02ba3
- Merge pull request #109 from HyperCodec/copilot/sub-pr-106
  HyperCodec
  authored
  39d363e
- fix add_neuron
  HyperCodec
  committed
  b1eb147
- Initial plan
  Copilot
  committed
  80e13c2
- Change get_random_connection receiver from &mut self to &self
  
  Copilot
  and
  HyperCodec
  committed
  3c5febc
- Fix activations_in_scope NONE handling and ActivationFn deserialization panic
  
  Copilot
  and
  HyperCodec
  committed
  4777194
- cargo fmt
  HyperCodec
  committed
  34b289d
- remove redundant check
  HyperCodec
  committed
  3d8f98a
- Merge pull request #110 from HyperCodec/copilot/sub-pr-106
  HyperCodec
  authored
  c5ea668
- add explicit panic when input_count != 0 for remove_neuron
  
  HyperCodec
  and
  Copilot
  authored
  eedb0cc
- remove unnecessary call to .into
  HyperCodec
  committed
  1d49ca7
- speed up tests
  HyperCodec
  committed
  d8ad5ad
- add back dependency that magically disappeared for some reason
  HyperCodec
  committed
  4a62ad8
- add --no-capture to ci testing
  HyperCodec
  committed
  15e1922
- Initial plan
  Copilot
  committed
  f1acdec
- Add debug tests to investigate crossover cycle issue
  
  Copilot
  and
  HyperCodec
  committed
  118e810
- Changes before error encountered
  
  Copilot
  and
  HyperCodec
  committed
  bb20c75
Commits on Feb 23, 2026
- Fix cycle removal bug in remove_cycles_dfs by using explicit path stack
  
  Copilot
  and
  HyperCodec
  committed
  75867b9
- cargo fmt
  HyperCodec
  committed
  1053996
- Merge pull request #111 from HyperCodec/copilot/sub-pr-106
  HyperCodec
  authored
  054ab38
- add little warnings to encourage release mode optimizations
  HyperCodec
  committed
  4ecb895
- update README example for newer genetic-rs (TODO remove ignore whenever the actual update is out)
  HyperCodec
  committed
  5f1496e
- bump genetic-rs version
  HyperCodec
  committed
  ca18aab
- fix test warnings
  HyperCodec
  committed
  f0528d2
- fix readme example
  
  HyperCodec
  and
  Copilot
  authored
  fb32507
- fix extra_genes example
  HyperCodec
  committed
  38c1fb7
- ignore debug tests
  
  HyperCodec
  and
  Copilot
  authored
  43f83b6
- actually ignore debug tests this time (stupid web commit thing didn't work properly)
  HyperCodec
  committed
  b1fcf5d

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Commits on Jan 31, 2026

Commits on Feb 6, 2026

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