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Ensembl Project

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  1. ensembl-vep ensembl-vep Public

    The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

    Perl 577 187

  2. VEP_plugins VEP_plugins Public

    Plugins for the Ensembl Variant Effect Predictor (VEP)

    Perl 172 124

  3. WiggleTools WiggleTools Public

    Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency

    C 154 25

  4. ensembl-rest ensembl-rest Public

    Language agnostic RESTful data access to Ensembl data over HTTP

    Perl 149 61

  5. ensembl ensembl Public

    The Ensembl Core Perl API and SQL schema

    Perl 85 77

  6. ensembl-pipeline ensembl-pipeline Public archive

    *DEPRECATED* Job management for the Ensembl Genebuild pipeline

    Perl 62 29

Repositories

Showing 10 of 217 repositories
  • ensembl-genomio Public

    Pipelines to turn basic genomic data into Ensembl cores and back

    Ensembl/ensembl-genomio's past year of commit activity
    Python 10 Apache-2.0 12 0 2 Updated Oct 12, 2026
  • ensembl-genes-nf Public

    Ensembl Genebuild NextFlow pipelines

    Ensembl/ensembl-genes-nf's past year of commit activity
    Nextflow 2 Apache-2.0 6 0 5 Updated Oct 12, 2026
  • distiller Public
    Ensembl/distiller's past year of commit activity
    Python 0 Apache-2.0 0 0 4 Updated Oct 12, 2026
  • Ensembl/ensembl-variation-pipelines's past year of commit activity
    Python 0 Apache-2.0 5 0 12 Updated Oct 12, 2026
  • nextflow_modules Public

    A collection of shared Ensembl modules used in NextFlow pipelines

    Ensembl/nextflow_modules's past year of commit activity
    Nextflow 4 3 1 4 Updated Oct 12, 2026
  • ensembl-anno Public

    Ensembl Automatic annotation pipeline

    Ensembl/ensembl-anno's past year of commit activity
    Python 11 Apache-2.0 7 1 1 Updated Oct 12, 2026
  • ensembl-client Public

    The frontend of the new Ensembl website

    Ensembl/ensembl-client's past year of commit activity
    TypeScript 17 Apache-2.0 4 0 4 Updated Oct 12, 2026
  • Ensembl/ensembl-prodinf-core's past year of commit activity
    Python 0 Apache-2.0 1 0 1 Updated Oct 11, 2026
  • ensembl-datacheck Public

    Code for checking Ensembl databases during release production

    Ensembl/ensembl-datacheck's past year of commit activity
    Perl 5 Apache-2.0 28 0 0 Updated Oct 10, 2026
  • ensembl-metadata-api Public

    ensembl_genome_metadata schema SQLAlchemy ORM layer

    Ensembl/ensembl-metadata-api's past year of commit activity
    Python 2 Apache-2.0 2 0 2 Updated Oct 9, 2026