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ADD --pam-only and --bgzip, for libraries short enough to match everywhere - #17

Merged

emattei merged 4 commits into

mainfrom

Nov 9, 2026

Merged

ADD --pam-only and --bgzip, for libraries short enough to match everywhere#17
emattei merged 4 commits into
mainfrom
feat/pam-only

Commits on Nov 9, 2026
- ADD --pam-only, to write just the sites a nuclease could act at
  
  emattei
  and
  claude
  committed
  3453e97
- FIX --pam-only, which asked the core and not the column
  
  emattei
  and
  claude
  committed
  d8e9b90
- FIX n_no_pam, which disagreed with the column beside it
  
  emattei
  and
  claude
  committed
  c298e88
- ADD --bgzip, to write the BED block-compressed and indexed
  
  emattei
  and
  claude
  committed
  f9f5200