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DSIMB

Dynamics of Structures and Interactions of Biological Macromolecules

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  1. SWORD2 SWORD2 Public

    SWift and Optimized Recognition of protein Domains

    Perl 30 1

  2. PoincareMSA PoincareMSA Public

    Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparative analysis of their amino acid sequences through multiple se…

    Jupyter Notebook 15 4

  3. anabag-handler anabag-handler Public

    Scripts to select antibody-antigen complexes from the ANABAG dataset.

    Jupyter Notebook 10 1

  4. MEDUSA MEDUSA Public

    A Deep Learning based protein flexibility prediction tool.

    Perl 8 2

  5. PEGASUS PEGASUS Public

    MD-derived protein flexibility prediction

    Python 8 1

  6. ICARUS ICARUS Public

    Flexible protein structural alignment based on Protein Units

    Perl 6 2

Repositories

Showing 10 of 18 repositories
  • ICARUS Public

    Flexible protein structural alignment based on Protein Units

    DSIMB/ICARUS's past year of commit activity
    Perl 6 2 0 0 Updated Sep 28, 2026
  • SWORD2 Public

    SWift and Optimized Recognition of protein Domains

    DSIMB/SWORD2's past year of commit activity
    Perl 30 1 1 0 Updated Aug 14, 2026
  • PEGASUS Public

    MD-derived protein flexibility prediction

    DSIMB/PEGASUS's past year of commit activity
    Python 8 1 0 0 Updated Jul 28, 2026
  • pepit Public

    The PepIT program proposes peptides that may interact with a given protein. PepIT is based on a non-sequential alignment algorithm to identify peptide binding sites that share geometrical and physicochemical properties with regions on the target protein.

    DSIMB/pepit's past year of commit activity
    R 1 0 0 0 Updated Jul 23, 2026
  • ARID-sf Public

    Scoring function specific for Antibody-Antigen models.

    DSIMB/ARID-sf's past year of commit activity
    Python 6 MIT 1 0 0 Updated May 30, 2026
  • PATHOS Public
    DSIMB/PATHOS's past year of commit activity
    Python 4 0 0 0 Updated May 16, 2026
  • anabag-handler Public

    Scripts to select antibody-antigen complexes from the ANABAG dataset.

    DSIMB/anabag-handler's past year of commit activity
    Jupyter Notebook 10 MIT 1 0 0 Updated Apr 21, 2026
  • VEP-Benchmark Public
    DSIMB/VEP-Benchmark's past year of commit activity
    Python 2 1 0 0 Updated Jan 23, 2025
  • DIONYSUS_data Public
    DSIMB/DIONYSUS_data's past year of commit activity
    Python 1 0 0 0 Updated Dec 12, 2024
  • AMBROSIA Public
    DSIMB/AMBROSIA's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 26, 2024
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