Issues

• Question Regarding SNP Count After Merging Genotype Files

  DReichLab/EIG#114 · Filter by author zhangjsyeah opened on Sep 29, 2025
  1

• Undefined behavior in PACKEDANCESTRYMAP hash code

  DReichLab/EIG#113 · Filter by author chrchang opened on Jun 19, 2025
  1

• How is estimated the genetic distance

  DReichLab/EIG#112 · Filter by author vanessaiza opened on Apr 22, 2025

• smartpca: LAPACKE_dlange issue

  DReichLab/EIG#110 · Filter by author vinodhsri opened on Jan 21, 2025
  1

• Query about renaming first column of IND file

  DReichLab/EIG#107 · Filter by author zhreyaz opened on Sep 4, 2024
  1

• elliptical confidence not calculated

  DReichLab/EIG#106 · Filter by author Kelzor opened on Jul 29, 2024
  3

• convertf exporting to PACKEDPED

  DReichLab/EIG#105 · Filter by author zmaroti opened on Jun 18, 2024
  1

• numsnps output:0

  DReichLab/EIG#104 · Filter by author zhreyaz opened on May 19, 2024
  1

• FST details (by SNP FST) not printed

  DReichLab/EIG#102 · Filter by author TaniaPGue opened on Apr 3, 2024
  4

• (getpedgenos) all.filter.ped bad geno *

  DReichLab/EIG#101 · Filter by author zishanw opened on Mar 14, 2024
  1

• Questions regarding multithreading

  DReichLab/EIG#96 · Filter by author freshspaceoctopus opened on Oct 30, 2023

• zz1 lines in logfile and run taking a very long time

  DReichLab/EIG#95 · Filter by author jaurbanChicago opened on Oct 25, 2023

• obsolete finite function

  DReichLab/EIG#92 · Filter by author MatthewMah opened on Sep 18, 2023

• XOR in snpsortit() of mcio.c

  DReichLab/EIG#91 · Filter by author ntakebay opened on Aug 3, 2023

• bad chrom: 100

  DReichLab/EIG#88 · Filter by author cfz1998 opened on May 17, 2023
  2

• Smartpca memory error

  DReichLab/EIG#87 · Filter by author LucasP78 opened on Apr 7, 2023
  2

• Issue when converting from plink to eigenstrat using convertf

  DReichLab/EIG#86 · Filter by author jaurbanChicago opened on Mar 7, 2023
  4

• .snp file format

  DReichLab/EIG#84 · Filter by author Liuyh275 opened on Jan 9, 2023
  1

• smartpca eigen vector file missing individuals

  DReichLab/EIG#83 · Filter by author victor-canta opened on Nov 1, 2022
  3

• Error while working with Eigensoft command smartpca command

  DReichLab/EIG#81 · Filter by author sharmavarun840 opened on Sep 15, 2022
  1

• Unable to make bed *and* map for convertf

  DReichLab/EIG#80 · Filter by author hhg7 opened on Jul 19, 2022

• Segmentation fault with 1000G but not with HM3

  DReichLab/EIG#76 · Filter by author swvanderlaan opened on Mar 30, 2022
  2

• Error with smarteigenstrat.perl accepting pca output from smartpca.perl

  DReichLab/EIG#75 · Filter by author harrsha4 opened on Feb 18, 2022
  4

• (getpedgenos) bad geno <DEL>

  DReichLab/EIG#74 · Filter by author Zymaniswenzai opened on Jan 4, 2022
  1

• Illegal instruction

  DReichLab/EIG#72 · Filter by author bamorim-bio opened on Oct 18, 2021
  4